Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g2015 ATGAAAAGGGAACAGCAAGAGGGATGCCGAGCTTTGATTCACAATTGCCCAATTCCAATGCATGACTCAGTTTTTGACTCACTAAAAGTAAGTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAGTTACCAACTTCACTCAATAAAAACCCATTAACAAGCCAAACAGAGCGACAAAGATTGCAATTACAAAAGGTTCAATTATCAAATCTGGTCAGTGGGGATACGGAACACCAGGAAGAGTCTGCCATGGCTGACGCCAGTCCTAGAACTGATATTTCTACAGATGTTGACACTGATGATAAGAATCCACGGTTTGATAGAAGTCAGTCCCTTGTTGCTGTGGTTTCTGACTCCAGTGACAGATCAAAGGATAAATCAGATCAGAAGACTCTCCGAAGGCTTGCTCAGAATCGTGAGGCAGCAAGAAAAAGTCGGTTGAGAAAGAAAGCTTATGTTCAACAGCTTGAAAGTAGTCGCTTAAAGTTAACCCAACTGGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGAATCATTATATCAAACTCAGGTGATCAAGCACATTCAATGAGTGGAAATGGGGCTATGGCATTTGATGTAGAGTATGCAAGATGGCTGGAAGAGCAGAATCGACAAGTTAATGAGCTAAGAGCAGCTGTAAATTCCCATGCAGGTGATACAGAACTTCGCATGATTATCGATGGTATAATGGCACATTATGATGAGATATTTAGGCTGAAGGCCGATGCAGCTAAGGCTGATGTCTTCCATTTGTTGTCTGGAATGTGGAAGACACCAGCAGAGAGGTGTTTTCTATGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTCCTGGTAAATCAGTTGGAACCTCTGACAGAGCAACAGTTAGTGGGTATTACCAACTTGCAGCAATCTTCCCAACAGGCCGAAGATGCATTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTTCTGAGACATTATCCACTGGATCACTTGGCTCCTCTGGTTCATCAGGCAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGGTTCATTAAGCAGGCTGACAATTTGCGCCAGCAGACTTTGCAACAAATTCACCGCATATTGACAACTCGGCAATCGGCTCGTGCACTACTTGCAATACATGACTACTTTTCTAGGTTGCGTGCCCTTAGCTCTCTTTGGCTTGCCCGCCCAAGAGACTGA 1263 0.4473 MKREQQEGCRALIHNCPIPMHDSVFDSLKVSSQTISRGPVEVDSFDKLPTSLNKNPLTSQTERQRLQLQKVQLSNLVSGDTEHQEESAMADASPRTDISTDVDTDDKNPRFDRSQSLVAVVSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIIISNSGDQAHSMSGNGAMAFDVEYARWLEEQNRQVNELRAAVNSHAGDTELRMIIDGIMAHYDEIFRLKADAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIKQADNLRQQTLQQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g2015 420 PANTHER TRANSCRIPTION FACTOR TGA9 26 420 - -
Gso20g2015 420 Coils Coil 154 181 - -
Gso20g2015 420 Coils Coil 211 231 - -
Gso20g2015 420 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 26 420 - -
Gso20g2015 420 SUPERFAMILY Leucine zipper domain 135 178 IPR046347 GO:0003700|GO:0006355
Gso20g2015 420 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 138 153 IPR004827 GO:0003700|GO:0006355
Gso20g2015 420 SMART brlzneu 131 194 IPR004827 GO:0003700|GO:0006355
Gso20g2015 420 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 133 177 IPR004827 GO:0003700|GO:0006355
Gso20g2015 420 ProSiteProfiles DOG1 domain profile. 200 417 IPR025422 GO:0006351|GO:0043565
Gso20g2015 420 Gene3D - 134 187 - -
Gso20g2015 420 MobiDBLite consensus disorder prediction 98 112 - -
Gso20g2015 420 Pfam Seed dormancy control 217 292 IPR025422 GO:0006351|GO:0043565
Gso20g2015 420 MobiDBLite consensus disorder prediction 77 137 - -
Gso20g2015 420 Pfam Basic region leucine zipper 131 177 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g2015 Gso-Chr20 50727297 50733584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g2015 89 420 bZIP Transcription Factor Family AT3G12250 78.916 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso20g2015 DOG1 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g2015 K14431 - gmx:100816123 701.819