Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g2009 ATGCGTCGGTGGCTTTGTTGTACTTGTCAGGTGGAAGAGTCTTACCCATCAAATGAAAATGAACACCTGAAAAGCCCAAGGAATTATGGAGATGGCAACCAAAAAGGCTCAAAGGTGTCAGCTCCTGTCAAACCTGAAACACAAAAGGCACCTCCACCTATTGAAGCTCCAGCCTTGTCTTTAGATGAGCTGAAGGAGAAGACTGACAACTTTGGTTCAAAGGCATTAATAGGTGAAGGATCGTATGGAAGGGTGTATTATGCAACCTTAAACAATGGGAAAGCAGTGGCTGTGAAAAAGCTTGATGTTTCATCTGAACCCGAATCAAATAATGAGTTTTTGACCCAGGTTTCCATGGTCTCAAGATTGAAGGATGACAATTTTGTTGAGTTGCATGGTTACTGTGTTGAAGGAAATCTTCGTGTACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACGGTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATACAGCGAGTTAGAATTGCAGTTGATGCAGCAAGGGGATTGGAATATTTACATGAGAAAGTTCAACCGCCGATTATACACAGAGATATCCGATCAAGTAATGTGCTAATATTTGAAGATTACAAGGCCAAGATAGCTGACTTTAACCTTTCTAATCAGGCCCCTGACATGGCTGCACGTCTTCATTCAACTCGTGTATTGGGAACTTTTGGTTATCATGCTCCAGAATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACAGGAAGAAAACCTGTTGACCATACCATGCCTAGAGGACAGCAGAGTCTTGTCACATGGGCTACTCCAAGATTAAGTGAAGATAAAGTGAAACAGTGCGTTGACCCAAAACTGAAGGGAGAATACCCCCCCAAAGGAGTTGCTAAGCTTGGAGCTGTTGCGGCACTGTGCGTGCAGTATGAAGCTGAGTTTAGGCCAAATATGAGCATTGTTGTTAAAGCACTCCAACCACTTCTGAAGTCTCCTGCTCCTGCTCCTGCTCCTGTTCCAGAAAGTTGA 1101 0.4342 MRRWLCCTCQVEESYPSNENEHLKSPRNYGDGNQKGSKVSAPVKPETQKAPPPIEAPALSLDELKEKTDNFGSKALIGEGSYGRVYYATLNNGKAVAVKKLDVSSEPESNNEFLTQVSMVSRLKDDNFVELHGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWIQRVRIAVDAARGLEYLHEKVQPPIIHRDIRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLGAVAALCVQYEAEFRPNMSIVVKALQPLLKSPAPAPAPVPES* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g2009 366 Gene3D Phosphorylase Kinase; domain 1 36 147 - -
Gso20g2009 366 SMART tyrkin_6 71 349 IPR020635 GO:0004713|GO:0006468
Gso20g2009 366 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g2009 366 Gene3D Transferase(Phosphotransferase) domain 1 149 358 - -
Gso20g2009 366 SUPERFAMILY Protein kinase-like (PK-like) 51 349 IPR011009 -
Gso20g2009 366 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Gso20g2009 366 MobiDBLite consensus disorder prediction 14 56 - -
Gso20g2009 366 PIRSF ILK 18 357 - -
Gso20g2009 366 Pfam Protein tyrosine and serine/threonine kinase 76 349 IPR001245 GO:0004672|GO:0006468
Gso20g2009 366 ProSitePatterns Tyrosine protein kinases specific active-site signature. 199 211 IPR008266 GO:0004672|GO:0006468
Gso20g2009 366 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 362 - -
Gso20g2009 366 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 ISOFORM X2 1 362 - -
Gso20g2009 366 CDD STKc_IRAK 77 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g2009 Gso-Chr20 50679370 50683867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g2009 5 350 Receptor kinase-like Gene Family AT4G02010 46.418 1.81e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Gso20g2009 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g2009 K13436 - gmx:548003 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g2009 20 50679370 50683867 Gso10g2596 10 52888907 52893843 GST