Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso20g2009 | ATGCGTCGGTGGCTTTGTTGTACTTGTCAGGTGGAAGAGTCTTACCCATCAAATGAAAATGAACACCTGAAAAGCCCAAGGAATTATGGAGATGGCAACCAAAAAGGCTCAAAGGTGTCAGCTCCTGTCAAACCTGAAACACAAAAGGCACCTCCACCTATTGAAGCTCCAGCCTTGTCTTTAGATGAGCTGAAGGAGAAGACTGACAACTTTGGTTCAAAGGCATTAATAGGTGAAGGATCGTATGGAAGGGTGTATTATGCAACCTTAAACAATGGGAAAGCAGTGGCTGTGAAAAAGCTTGATGTTTCATCTGAACCCGAATCAAATAATGAGTTTTTGACCCAGGTTTCCATGGTCTCAAGATTGAAGGATGACAATTTTGTTGAGTTGCATGGTTACTGTGTTGAAGGAAATCTTCGTGTACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACGGTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATACAGCGAGTTAGAATTGCAGTTGATGCAGCAAGGGGATTGGAATATTTACATGAGAAAGTTCAACCGCCGATTATACACAGAGATATCCGATCAAGTAATGTGCTAATATTTGAAGATTACAAGGCCAAGATAGCTGACTTTAACCTTTCTAATCAGGCCCCTGACATGGCTGCACGTCTTCATTCAACTCGTGTATTGGGAACTTTTGGTTATCATGCTCCAGAATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACAGGAAGAAAACCTGTTGACCATACCATGCCTAGAGGACAGCAGAGTCTTGTCACATGGGCTACTCCAAGATTAAGTGAAGATAAAGTGAAACAGTGCGTTGACCCAAAACTGAAGGGAGAATACCCCCCCAAAGGAGTTGCTAAGCTTGGAGCTGTTGCGGCACTGTGCGTGCAGTATGAAGCTGAGTTTAGGCCAAATATGAGCATTGTTGTTAAAGCACTCCAACCACTTCTGAAGTCTCCTGCTCCTGCTCCTGCTCCTGTTCCAGAAAGTTGA | 1101 | 0.4342 | MRRWLCCTCQVEESYPSNENEHLKSPRNYGDGNQKGSKVSAPVKPETQKAPPPIEAPALSLDELKEKTDNFGSKALIGEGSYGRVYYATLNNGKAVAVKKLDVSSEPESNNEFLTQVSMVSRLKDDNFVELHGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWIQRVRIAVDAARGLEYLHEKVQPPIIHRDIRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLGAVAALCVQYEAEFRPNMSIVVKALQPLLKSPAPAPAPVPES* | 367 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso20g2009 | 366 | Gene3D | Phosphorylase Kinase; domain 1 | 36 | 147 | - | - | |
Gso20g2009 | 366 | SMART | tyrkin_6 | 71 | 349 | IPR020635 | GO:0004713|GO:0006468 | |
Gso20g2009 | 366 | ProSiteProfiles | Protein kinase domain profile. | 71 | 353 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Gso20g2009 | 366 | Gene3D | Transferase(Phosphotransferase) domain 1 | 149 | 358 | - | - | |
Gso20g2009 | 366 | SUPERFAMILY | Protein kinase-like (PK-like) | 51 | 349 | IPR011009 | - | |
Gso20g2009 | 366 | ProSitePatterns | Protein kinases ATP-binding region signature. | 77 | 100 | IPR017441 | GO:0005524 | |
Gso20g2009 | 366 | MobiDBLite | consensus disorder prediction | 14 | 56 | - | - | |
Gso20g2009 | 366 | PIRSF | ILK | 18 | 357 | - | - | |
Gso20g2009 | 366 | Pfam | Protein tyrosine and serine/threonine kinase | 76 | 349 | IPR001245 | GO:0004672|GO:0006468 | |
Gso20g2009 | 366 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 199 | 211 | IPR008266 | GO:0004672|GO:0006468 | |
Gso20g2009 | 366 | PANTHER | PTO-INTERACTING PROTEIN 1-LIKE | 1 | 362 | - | - | |
Gso20g2009 | 366 | PANTHER | PTI1-LIKE TYROSINE-PROTEIN KINASE 3 ISOFORM X2 | 1 | 362 | - | - | |
Gso20g2009 | 366 | CDD | STKc_IRAK | 77 | 352 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso20g2009 | Gso-Chr20 | 50679370 | 50683867 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso20g2009 | 5 | 350 | Receptor kinase-like Gene Family | AT4G02010 | 46.418 | 1.81e-93 | 293 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-VIII | Gso20g2009 | PK_Tyr_Ser-Thr | 1.3e-45 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso20g2009 | K13436 | - | gmx:548003 | 705.286 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso20g2009 | 20 | 50679370 | 50683867 | Gso10g2596 | 10 | 52888907 | 52893843 | GST |