Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1998 ATGGTATCAGCTACAATTAGGCGAATTGTGTCGCCCTGTTGGAGACCATCTGAGGGTGAAATTTCTAGTAGGCATGGAGATGCAAGTGGACGTGCTAATGGTTTGTTGTGGTATAAAGATTCAGGAAGACATGCGAATGGTGAATTCTCAATGGCAGTTATTCAGGCAAACAATTTGTTAGAGGATCAAAGCCAACTTGAATCCGGCCCCTTGAGCTTAACTGAGGGAAATCCTCAAGGAACTTTTGTTGGTATATATGATGGGCATGGAGGTCCAGAAGCTGCCCGGTTTGTCAATGACCGTTTATTCAATAACATCAAGAAGTTTACTTCAGAAAATAATGGAATGTCAGCTGATGTTATCAATAAAGCATTCTTGGCAACTGAAGAAGAATTTCTTTCTTTGGTAGAGAAGCTGTGGCTGCACAAGCCGCCGATAGCATCAGTTGGTTCTTGCTGTTTGATAGGCATAATATGTAGTGGGGAGCTCTATATTGCAAATGCAGGAGATTCTCGAGCAGTATTAGGTAGACTGGATGAGGCTATGAAAGAGATTAAAGCTATTCAACTATCCGTGGAGCACAATGCTAGCCATGCATCTGTCAGAGAAGAGTTGCACTCATTGCATCCTAATGATCCTCAGATTGTGGTTATGAAGCACCAGGTCTGGCGCGTGAAGGGTCTGATTCAGATTTCAAGATCCATTGGTGATGCCTATCTAAAGAAGGCAGAGTTTAATAAAGCACCATTATTAGCAAAATTTCGACTCTCAGAACCCTTTGATCAGCCAATCCTTAAAGCTGAACCAGCTATACTAGTACAGAAACTGTGTCCTCAAGATCAGTTTCTTATACTTGCATCAGATGGGTTATGGGAGCAAATGAGCAATCAAGAAGCAGTTGACATTGTCCAGAGCTGTCCACGTAATGGAGCCGCGAAGAAACTTGTGAAAACTGCACTTTGTGAAGCTGCAAAGAAAAGAGAAATGAGATACTCAGACTTGAGAAAGATTGACCGAGGGGTGAGGAGACATTTCCATGATGACATCACGGTTATAGTTTTGTATCTTGATTCAAATTTTTTGTCTCATGCCAATTCACGTGTACCCTTGGTTTCGATCAAAGGAGGTGGTGATAGTGGTTATGGTATTGGTATTATAGATGCCTAG 1167 0.4199 MVSATIRRIVSPCWRPSEGEISSRHGDASGRANGLLWYKDSGRHANGEFSMAVIQANNLLEDQSQLESGPLSLTEGNPQGTFVGIYDGHGGPEAARFVNDRLFNNIKKFTSENNGMSADVINKAFLATEEEFLSLVEKLWLHKPPIASVGSCCLIGIICSGELYIANAGDSRAVLGRLDEAMKEIKAIQLSVEHNASHASVREELHSLHPNDPQIVVMKHQVWRVKGLIQISRSIGDAYLKKAEFNKAPLLAKFRLSEPFDQPILKAEPAILVQKLCPQDQFLILASDGLWEQMSNQEAVDIVQSCPRNGAAKKLVKTALCEAAKKREMRYSDLRKIDRGVRRHFHDDITVIVLYLDSNFLSHANSRVPLVSIKGGGDSGYGIGIIDA* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1998 388 ProSitePatterns PPM-type phosphatase domain signature. 82 90 IPR000222 GO:0043169
Gso20g1998 388 PANTHER ALPHABET, ISOFORM E-RELATED 8 378 - -
Gso20g1998 388 SMART PP2C_4 40 354 IPR001932 -
Gso20g1998 388 CDD PP2Cc 49 356 IPR001932 -
Gso20g1998 388 Gene3D - 37 367 IPR036457 -
Gso20g1998 388 ProSiteProfiles PPM-type phosphatase domain profile. 48 356 IPR001932 -
Gso20g1998 388 SUPERFAMILY PP2C-like 73 357 IPR036457 -
Gso20g1998 388 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 8 378 - -
Gso20g1998 388 Pfam Protein phosphatase 2C 70 327 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1998 Gso-Chr20 50516524 50520969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1998 3 378 PP2C-type Phosphatase Gene Family AT3G12620 75.132 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1998 K01102 - gmx:100807559 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1998 20 50516524 50520969 Gso10g2584 10 52754502 52758604 GST