Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1995 ATGCCAGAGCTTCGTAGAGGAGTGCGACGTGGGCGTGGCCGTGGCCAGAAAGCATCGGAACCGGCAAGGAAGGAGTTGAAGGCTCGTGCGGCGCCGAGAGGGAGACCTAGGACTAGATTGGCGGCGAAGGAATTGGAGCGCCAGGAGCCGTTGATCCCGATACCGATACCGGAACCGTTGATCCCGATACCGGAGCCGGCGAAAGAAGAGAAAAAGAAAGTTGGTGTGGGGGTGAATATGGGTGACGAAAGCGGTGGGTTGAGTGGTAATAAGCCTGAGGAGGATGCCACCACTCCTCCTTTTCCTGATAGGGTTCAAGTGGGAGGATCGCCCATGTACAAGGTAGAGAGAAAATTGGGTAAAGGTGGATTTGGTCAGGTTTTTGTTGGCCGTCGGGAGCGTGCAACAGGTGCTGGAGCTGTGGAGGTGGCTCTGAAATTTGAACATAGGAACAGTAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAACACCCTTGGGGGTAGTTATGGAATACCAAAAGTACACTACAAAGGAAGACAAGGAGAATATTATGTGATGGTTATGGACATACTTGGTCCAAGTTTGTGGGATCTCTGGAATTCCTCAAGCCAAATGATGTCTTCTGAAATGGTCTCATGTATAGCGGTTGAGTCCTTATCAATACTTGAAAAGATGCACTCAAAAGGTTATGTGCATGGAGATGTAAAACCGGAAAACTTTTTACTTGGTCAGCCAGCTACAGTGCAAGAGAAGAAACTGTTTCTTGTTGACCTTGGATTAGCAACAAAATGGAGAGACACCTCCAGTGGACAGCATGTTGACTATGATCAACGCCCTGATATGTTTAGAGGAACTGTTCGATATGCTAGTGTTCATGCTCATTTGGGGAGAACTGCTAGTAGAAGAGATGATCTTGAATCTCTTGCATACACACTAGTATTCCTTCATAAGGGCCGATTACCATGGCAAGGTTATCAGGGTGATAGCAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCCGAGACACTGTGCTGCTTGTGCCCTCCCCCTTTTAGACATTTTCTTGAGACTGTAGTGAATATGAAATTTGATGAAGAACCTAATTATTCCAAGCTAATATCTTTGTTTGACGGTGCGATTGGACCCAATCCAGCATTGCGGCCAATTAATACTGAAGGTGCCCAAAAGGTTGGGCAAAAGCGGGGTAGGTTGAATGTTGAAGATGATGATTCACAGCCAAGAAAGAAGGTCCGTTTAGGGATTCCTGCTACACAATGGATTTCAATTTACAATGCAAGACTTCCAATGAAACAAAGGTACCATTACAATGTGTCTGATGCAAGATTAGAACAGCATGTCGAGAGAGGGGTTGCAGATGGCCTTCTTATTAGTTGTGTGTCTTCTTGTTGCAATCTTTGGGCCCTTATTATGGATGCTGGAACTGGTTTTACAGCTCAAGTTTACAAGTTGTCAACCTTTTTCTTGCACAAGGAATGGATTATGGAGCAGTGGGATAAAAACTTTTACATCACTTCTATTGCAGGGAGCAACAATGGCAGCTCTCTTGTGGTGATGTCAAAAGGTACGCAGTATACTCAACAATCTTACAAAGTGAGTGAATCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTCACTTCAATGGCTACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTCGAAATGCTGGATTCAGTAAACAGGTGGTTGAACTTGATTTTCTCTATCCAAGTGAGGGCATCCATAAACGTTGGGATAAAGGTTATAGGATTACAGCAACCGCAGCTACATTGGATCAATCTGCTCTTATATTAAGTATTCCGAGGCGCAAACTCAGTGATGAAACTCAGGAAACTCTACGTACATCGCAATTTCCCGGCACACATGTTAAGGAAAAATGGTCAAAAAACCTTTACCTTGCCTGTTTGTGCTACGGACGCACAGTATGCTGA 2010 0.4502 MPELRRGVRRGRGRGQKASEPARKELKARAAPRGRPRTRLAAKELERQEPLIPIPIPEPLIPIPEPAKEEKKKVGVGVNMGDESGGLSGNKPEEDATTPPFPDRVQVGGSPMYKVERKLGKGGFGQVFVGRRERATGAGAVEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSYGIPKVHYKGRQGEYYVMVMDILGPSLWDLWNSSSQMMSSEMVSCIAVESLSILEKMHSKGYVHGDVKPENFLLGQPATVQEKKLFLVDLGLATKWRDTSSGQHVDYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLVFLHKGRLPWQGYQGDSKSFLVCKKKMGTSPETLCCLCPPPFRHFLETVVNMKFDEEPNYSKLISLFDGAIGPNPALRPINTEGAQKVGQKRGRLNVEDDDSQPRKKVRLGIPATQWISIYNARLPMKQRYHYNVSDARLEQHVERGVADGLLISCVSSCCNLWALIMDAGTGFTAQVYKLSTFFLHKEWIMEQWDKNFYITSIAGSNNGSSLVVMSKGTQYTQQSYKVSESFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSKQVVELDFLYPSEGIHKRWDKGYRITATAATLDQSALILSIPRRKLSDETQETLRTSQFPGTHVKEKWSKNLYLACLCYGRTVC* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1995 669 Pfam Protein kinase domain 113 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1995 669 Gene3D Transferase(Phosphotransferase) domain 1 93 424 - -
Gso20g1995 669 PANTHER CASEIN KINASE I-LIKE PROTEIN 67 642 - -
Gso20g1995 669 MobiDBLite consensus disorder prediction 1 46 - -
Gso20g1995 669 ProSitePatterns Protein kinases ATP-binding region signature. 119 146 IPR017441 GO:0005524
Gso20g1995 669 CDD STKc_CK1 112 383 - -
Gso20g1995 669 SMART serkin_6 113 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1995 669 ProSiteProfiles Protein kinase domain profile. 113 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1995 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Gso20g1995 669 PANTHER CASEIN KINASE-RELATED 67 642 - -
Gso20g1995 669 MobiDBLite consensus disorder prediction 1 108 - -
Gso20g1995 669 SUPERFAMILY Protein kinase-like (PK-like) 113 390 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1995 Gso-Chr20 50501927 50507263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1995 83 341 AGC Kinase Gene Family AT3G08730 23.106 4.64e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Gso20g1995 Pkinase 2.4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1995 - - gmx:100807373 1306.58