Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1994 ATGGCGTCAACATCTTGCGTTGGTAACACTTCATTATCTATGAAAGATTCAGCTTCGAGCTATTCTGCATATCCTCTTCCTCTAGCAAAATATGAGGAGGTTGTGGACAATCCCCAGCTCTTCATGTTTACCTTGGAGAAACTTCACGCTGCTATGGGTACCAAGTTCATGATTCCCATTGTTGGAGGAAGAGAACTAGATTTGCATCGCCTCTTTGTTGAAGTGAGTTCTCGAGGAGGGATTGCGAAGATAATTAGAGAAAGGAAATGGAAAGACGTAACTTCAGTCTTTAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATGTTTCATTGCTCTACCATTATGAACAAATCTACTTCTTTAAAGCTCGTGAATGGGATCCTATTGCTCCTGATGTTTCGCAGAACCAATCGACCCTGCCAGTTCCTCCTCCAAAAATGCAGTTTCAGCAGCCTTTGTCAGAAACTCAACCAGCTGTCTTTCAACTGTCAAATGTTAATGCTGCTAAATTGCCTGAAGCAATGGCAGCATCTTCGGCAGGTTCTCCAGTCATTGGGGTCATTGATGGGAAATTTGAAAGTGGGTATCTAGTTACTGTCACAATTGGTTCGGAAAAACTCAAAGGTGTGCTTTATCAAGCTCCACAAAACCCTGTATTGACAGCATCCCATCATAGTGCCTCAGCTAATAACAACAATGCTTCTGCTTCATTGGGTGTCCATCGTCGACGACGCAGGAAGAAATCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCTAACAGAAGTGGGTACAATTTCTTCTTTGCTGAGCAGCATGCAAGACTAAAGCTACTTCACCATGGAAAGGACAGAGAGATTAGTAGGATGATTGGTGAACTCTGGAACAAGTTAAAAGAATCAGAAAAGACGGTTTATCAAGAGAAGGCCATGAAGGATAAAGAGAGGTACAGAGTAGAAATGGAGGATTATCGGGAGAAACTGAAGATGGGCCCAGTTATCAGTGATGCTGTGCCGCTTCAACAACGACTTCCTGAACCAGATACTGACATGTTGGATGAAGCTGAGGGAGATTCTCCTCAAACTCCAGAGGAGAGCAGCTCTGGTGGAAGTGATTATGAAGATTATAATAAAACTGCAGAGAGAGGTTTTGATATGGATGCATTGCCTGTTATAGGAATGGGCGCAGAAACAAGTTATTTGGGTTCAGAAGAGAAGTTATCTAAGGGGGGGTTATGA 1260 0.4254 MASTSCVGNTSLSMKDSASSYSAYPLPLAKYEEVVDNPQLFMFTLEKLHAAMGTKFMIPIVGGRELDLHRLFVEVSSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYVSLLYHYEQIYFFKAREWDPIAPDVSQNQSTLPVPPPKMQFQQPLSETQPAVFQLSNVNAAKLPEAMAASSAGSPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPVLTASHHSASANNNNASASLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLHHGKDREISRMIGELWNKLKESEKTVYQEKAMKDKERYRVEMEDYREKLKMGPVISDAVPLQQRLPEPDTDMLDEAEGDSPQTPEESSSGGSDYEDYNKTAERGFDMDALPVIGMGAETSYLGSEEKLSKGGL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1994 419 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Gso20g1994 419 Gene3D High mobility group box domain 249 339 IPR036910 -
Gso20g1994 419 MobiDBLite consensus disorder prediction 229 272 - -
Gso20g1994 419 MobiDBLite consensus disorder prediction 345 395 - -
Gso20g1994 419 SMART ARID_2 32 122 - -
Gso20g1994 419 Coils Coil 314 334 - -
Gso20g1994 419 SMART hmgende2 264 333 IPR009071 -
Gso20g1994 419 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Gso20g1994 419 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 395 - -
Gso20g1994 419 MobiDBLite consensus disorder prediction 229 244 - -
Gso20g1994 419 SMART bright_3 36 127 IPR001606 GO:0003677
Gso20g1994 419 Gene3D - 28 138 IPR036431 GO:0003677
Gso20g1994 419 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Gso20g1994 419 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Gso20g1994 419 CDD HMGB-UBF_HMG-box 265 329 - -
Gso20g1994 419 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 395 - -
Gso20g1994 419 PRINTS High mobility group (HMG1/HMG2) protein signature 297 316 - -
Gso20g1994 419 PRINTS High mobility group (HMG1/HMG2) protein signature 316 336 - -
Gso20g1994 419 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Gso20g1994 419 SUPERFAMILY HMG-box 253 336 IPR036910 -
Gso20g1994 419 SUPERFAMILY ARID-like 35 134 IPR036431 GO:0003677
Gso20g1994 419 MobiDBLite consensus disorder prediction 245 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1994 Gso-Chr20 50487233 50492594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1994 1 367 ARID Transcription Factor Family AT1G04880 60.733 1.20e-133 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso20g1994 ARID 5.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1994 - - gmx:100807028 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1994 20 50487233 50492594 Gso10g2581 10 52724201 52729400 GST