Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1979 ATGTCATCTCGCATTGTTGCGGAGAATGCTCTATCGCTCACCAATATTGTCACGCCTCCATATTTCGACCTAATGGAACTGGACGATCTCACGCGCCGCCCCTCCGCCGGAGACATGCCCACGCTCGGACAGCTCCTCAAGCACGTCGGAGACGTGCGGAAGGAAGCCTCCGGCGACGGAAGCGAGACGCCCGTGCACCACGCTCTCGACATCCCCGGGATCGAGCCTCGCTCGCTGCCCTTCGTCCTCTCCTTCAGCAACCTCACCTACAGCATCAAGAGTCGCCGCAAGATGAGCCTCTCATCAATCTTTCCCCGTCGTAGCAACCGCCTCGGCGCGGTGGCGGAGGCGCCAACGGTCGGCGAGAGCATGTTCACTCGGACGAAGACGCTGCTGAACGATATCTCCGGGGAGGCGCGGGACGGCGAGATCATGGCGGTCCTCGGCGCCAGTGGTTCAGGAAAGTCAACCCTAATCGACGCGCTGGCGAACAGAATCGCCAAAGGAAGTCTAAAAGGCACGGTAGCGCTGAACGGCGAAGCTTTGGAGTCGCGTCTTCTGAAGGTGATTTCCGCGTACGTGATGCAAGACGACCTTCTCTTCCCTATGCTCACCGTGGAAGAGACTCTGATGTTCGCTGCGGAGTTCCGACTTCCTCGCACGCTATCCAAGTCGAAAAAAAGCGCACGCGTGCAGGCGCTCATAGATCAGCTAGGTCTCCGAAACGCGGCGAAAACAGTCATCGGAGACGAAGGCCACCGTGGAGTCTCCGGCGGAGAGCGGCGGAGAGTGTCGATCGGAACCGACATAATCCACGACCCGATCCTTCTATTCCTGGACGAGCCAACCTCGGGACTTGATTCAACGAGCGCGTACATGGTGGTGAAGGTGCTGCAGAGAATCGCACAGAGCGGAAGCATCGTGATCATGTCGATTCACCAACCGAGTTACAGAATCCTAGGGCTACTCGACCGCATGATCTTCTTATCACGCGGCCAAACAGTGTACAGCGGTTCACCCTCGCAGCTACCGCTATACTTCTCGGAGTTCGGTCATCCGATTCCAGAAACCGATAACAGAACCGAGTTCGCGTTGGACCTGATTCGCGAACTGGAAGGCTCACCAGGGGGAACAAAGAGCTTGGTGGAGTTCAACAAGTCGTGGCAGAGCATGACGAAGCACCACCAGGAAAAGGAAGAGGAAAGAAACGGCTTGTCGTTGAAGGAAGCAATAAGCGCGAGCATCTCGCGAGGGAAACTGGTATCAGGGGCTAGCAACACGAACCCTAACCCGTCGTCGATGGTGCCAACTTTTGCGAACCAGTTTTGGGTGGAGATGGCGACGCTGTCGAAACGGTCGTTTTTGAATTCTCGAAGAATGCCGGAGTTGATTGGGATTAGATTGGGAACGGTGATGGTGACGGGGTTTATACTGGCCACGATGTTTTGGCAACTGGATAACTCACCAAAAGGAGTGCAAGAGAGGCTAGGATTCTTCGCGTTTGCCATGTCAACTACTTTTTACACCACCGCAGACGCGCTTCCAGTGTTTCTCCAAGAACGCTACATCTTCATGAGGGAAACTGCTTACAACGCCTACCGCAGATTGTCGTATTTGGTTTCCCATGCGCTGGTTGCGTTGCCCGCATTAGCATTTCTCTCGCTGGCTTTCGCGGCAGCCACGTTTTGGGCCGTGGGCCTGGACGGTGGAATATCGGGCTTTTTGTTTTATTTTCTGATAATATTCGCTTCGTTTTGGGCCGGGAACTCGTTCGTGACGTTTCTTTCGGGGGTGGTGCCTCACGTGATGCTGGGTTACACTATCGTGGTTGCGATTCTGGCATACTTCTTGCTCTTCAGTGGCTTCTTCATTAACAGGGATAGGATTCCCAGTTACTGGATATGGTTCCACTACTTGTCGTTGGTGAAGTACCCATACGAAGCGGTTCTGCAGAACGAGTTCGATGACCCCGTCAAGTGCTTCGTGAGGGGTGTCCAGATATTCGATAACACTCCGCTTGGCTCGGTGCCGGAGCCTCTGAAGGTGAAGCTTTTGGAGACCATGAGCAGCACGCTGGGAACGAAGATCACCACCTCCACTTGTTTGACCACAGGTGCCGATATATTGCAGCAAAACGGGGTCACCGATTTGACCAAGTGGAACTGCTTCTGGATCACGGTGGCTTGGGGATTCTTCTTTAGGTTCCTCTTCTATTTGTCATTGTTACTGGGCAGCAAGAACAAGAGGAGGTGA 2253 0.5451 MSSRIVAENALSLTNIVTPPYFDLMELDDLTRRPSAGDMPTLGQLLKHVGDVRKEASGDGSETPVHHALDIPGIEPRSLPFVLSFSNLTYSIKSRRKMSLSSIFPRRSNRLGAVAEAPTVGESMFTRTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVALNGEALESRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKSARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGTDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPSQLPLYFSEFGHPIPETDNRTEFALDLIRELEGSPGGTKSLVEFNKSWQSMTKHHQEKEEERNGLSLKEAISASISRGKLVSGASNTNPNPSSMVPTFANQFWVEMATLSKRSFLNSRRMPELIGIRLGTVMVTGFILATMFWQLDNSPKGVQERLGFFAFAMSTTFYTTADALPVFLQERYIFMRETAYNAYRRLSYLVSHALVALPALAFLSLAFAAATFWAVGLDGGISGFLFYFLIIFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPSYWIWFHYLSLVKYPYEAVLQNEFDDPVKCFVRGVQIFDNTPLGSVPEPLKVKLLETMSSTLGTKITTSTCLTTGADILQQNGVTDLTKWNCFWITVAWGFFFRFLFYLSLLLGSKNKRR* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1979 750 Pfam ABC-2 type transporter 447 654 IPR013525 GO:0016020|GO:0140359
Gso20g1979 750 Gene3D - 122 346 IPR027417 -
Gso20g1979 750 SMART AAA_5 141 333 IPR003593 -
Gso20g1979 750 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 115 356 IPR003439 GO:0005524
Gso20g1979 750 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 18 744 - -
Gso20g1979 750 Pfam ABC transporter 132 284 IPR003439 GO:0005524
Gso20g1979 750 PANTHER ABC TRANSPORTER G FAMILY MEMBER 6-LIKE 18 744 - -
Gso20g1979 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 344 IPR027417 -
Gso20g1979 750 ProSitePatterns ABC transporters family signature. 256 270 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1979 Gso-Chr20 50366218 50368939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1979 131 343 Calmodulin-binding Proteins AT2G36910 29.091 3.20e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1979 K05681 - gmx:100803658 1421.37