Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1959 ATGATGGGTTCGAGGGGACTGTTCGGGTGGTCCCCGCCGCACATACAGCCTCTCACGCCCGTCTCTGAGGTGTCGGAGCCGCCGGAGTCGCCGTCGCCTTACCTCGACCTCGGTGCCGAGACCTCCGCAACTCAGCCTATGGAGGTCGAGGAGGAGATGGAGGAGGCCGACGAGATTGAGCCGCCGCCCGCCGCCGTTCCTTTCTCCCGCCTCTTCGCCTGCGCTGACCACCTCGATTGGTTTCTTATGCTCGTCGGCTCCATCGCCGCCGCCGCACACGGCACTGCTCTCGTTGTTTACTTGCACTACTTCGCCAAGGTTCTCCGGGTTCCACAGCAGGGTTTGCCGGAAGAGCAGTTTCACAGGTTTAAAGAGCTTGCTTTAACCATTGTTTATATTGCTGGGGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCGTGTTGGATTCTTACTGGAGAACGGCAGACTGCTGTCATCAGATCAAAATATGTCCAAGTATTACTTAACCAAGATATGAGTTTTTTTGATACTTATGGAAATAACGGAGACATTGTGAGTCAAGTATTGAGTGATGTGCTGCTCATTCAGTCTGCTCTTAGTGAAAAGGTTGGGAATTATATTCATAATATGGCAACATTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTGATAACATTAGCTACAGGTCCATTTATTGTTGCTGCAGGAGGAATATCAAATATATTCCTCCATAGGCTTGCCGAGAATATTCAAGATGCATATGCTGAAGCAGCCAGCATTGCTGAACAGGCAGTTTCATATATAAGGACCTTATATGCATTTACAAATGAAACATTGGCCAAATATTCATACGCAACATCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTCGTTCAAGGCCTTGGCCTTGGTTTTACATATGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGGCTCTTGATTATACATGGAAAAGCTCATGGTGGTGAAATTATAACAGCTCTGTTTGCTGTGATTCTAAGTGGCTTGGGATTGAATCAAGCTGCAACAAATTTCTACTCATTTGATCAAGGGCGAATAGCTGCCTATAGACTGTTTGAGATGATAAGCCGGTCATCCTCATCTTTTAATCATGATGGCAGTGCTCCAGCTTCTGTCCAAGGAAATATAGAGTTTCGGAATGTTTACTTCAGTTATCTTTCTCGCCCTGAAATCCCTATCTTGAGTGGGTTTTATCTCACTGTTCCTGCTAAAAAAACTGTGGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCCCTCATGGAGCGGTTCTATGATCCAACTTTAGGGGAAGTTCTTTTAGATGGTGAAAACATAAAGAATATGAAACTGGAATGGCTAAGGAACCAAATAGGACTGGTCACCCAGGAACCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGCGAGATACCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACCTTTATCAGCTCATTAGATAAAGGTTATGACACACAGGTTGGCAGGGCTGGTCTAGCTTTGACAGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTTTAAATCCATCAATTCTTTTGCTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGTCTGTTCAGGAGGCTCTGGATCTCCTCATGTTGGGACGCTCAACAATCATAATTGCTCGAAGGCTTAGTCTTATAAAGAATGCTGATTATATAGCTGTTATGGAGGATGGTCAACTGGTTGAGATGGGTACTCATGATGAGTTACTCACCCTGGATGGCTTATACGCAGAGCTTCTTCGATGTGAAGAGGCCACAAAACTTCCTAAGAGGATGCCTGTTCAAAACTACAAGGAGACTGCAACTTTCCAAATTGAGAAAGATTCTTCAGAAAGTCATAGCTTCAAAGAACCTTCATCTCCTAAAATGATAAAGTCACCCTCTCTTCAGAGAGTTTCTGCCATATTTCGGCCTTCAGATGGCTTCTTCAACTCACAAGAATCACCAAAAATCCGGAGCCCACCTTCTGAGAAGTTGATGGAGAATGGCCAGTCTTTAGATTCATCAGATAAGGAGCCATCAATAAAAAGGCAGGATAGTTTTGAAATGAGACTACCAGAGTTACCCAAGATTGATGTTCAATGTGTGCATCGACAAACATCAAATGGTTCTGATCCAGAATCTCCCATTTCACCTCTTTTAACGTCCGACCCTAAAAATGAACGCTCCCATTCACAGACTTTTAGCAGACCTGATTGTCATTCTGATGATCTTTTGGTGAAAATGAGTGAAACAAAGGATGCAAGGCATCGAAAACAACCCTCAATTTGGAGGCTAGCAGAGCTTAGTTTTGCAGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCTATCTTTGGTTCTTTCAATCCCCTTCTTGCTTATGTTATTGGTCTGGTGGTGACAGACTATTATAGAATTGATGAAGCTCAGCACTTACAAGGGGAGATAAACAAATGGTGCTTGATCATTGCCTGCATGGGTATTGTGACAGTTGTTGCCAACTTTTTACAGCATTTCTATTTTGGTATTATGGGGGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTTCGCAATGAAACTGGATGGTTTGATGAAGAGGAAAATAGTGCTGACAATTTATCCATGCGCTTGGCCAATGATGCTACATTTGTGCGAGCAGCATTCAGTAACCGACTTTCCATATTTATTCAGGACAGTGCTGCTGTTATTGTTGCTTTTCTCATTGGTGTTTTGCTGCACTGGCGATTAGCACTTGTGGCCTTAGCAACACTTCCAGTTCTCTGTGTTTCTGCTCTTGCCCAGAAATTGTGGCTTGCTGGCTTTTCAAAGGGCATACAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGGAATATTTACACTGTTGTTGCATTTTGTGCTGGTAATAAGGTGATGGAACTCTACCAGTTGCAGTTAAATAAAATATTTAAGCAAAGCTTTCTTCATGGAGTGGCCATTGGTTTTGGATTTGGCTTTTCACAGTTTCTGCTCTTTGCTTGTAATGCCCTTCTACTTTGGTACACTGCACTATGTGTAAATAAGAGTTATGTGGATCTACCTACTGCTCTCAAGGAGTACATTGTTTTCTCATTTGCTACATTTGCCCTTGTGGAGCCTTTCGGGTTGGCTCCTTACATACTTAAGCGACGTAAATCTCTCATGTCAGTGTTTGAAATTATAGATCGTGTGCCTAAGATTGATCCTGATGATAGCTCAGCACTGAAGCCACCCAATGTATATGGAAGCATTGAGTTGAAAAATATTGATTTTTGTTATCCTTCTCGACCTGAAGTGTTGGTATTAAGCAATTTTAGTCTCAAAGTCAATGGAGGACAAACAATTGCTGTAGTGGGAGTTTCGGGATCAGGGAAGAGCACAATAATATCTTTGATTGAGAGATTCTATGATCCAGTTGCCGGCCAAGTTTTGCTAGATGGGAGGGATTTAAAACAATATAATTTGAGATGGTTGAGGAGCCACCTTGGTTTGGTTCAGCAGGAACCAATTATCTTCTCAACTACCATAAGGGAAAACATCATATATGCCAGGCATAATGCCAGTGAAGCTGAAATGAAGGAGGCTGCAAGAATAGCAAATGCTCACCATTTCATTAGTAGCTTGCCTCATGGTTATGACACTCATGTTGGGATGAGAGGTGTTGACTTAACTCCAGGACAAAAACAGAGAATTGCAATTGCAAGGGTAGTGCTTAAAAATGCTCCTATTTTGTTGTTGGATGAAGCTAGTTCATCAATTGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGACACCCTAATAATGGGAAACAAGACCACTATTTTAATAGCACACAGGGCTGCGATGATGAGGCATGTGGACAACATAGTAGTTCTAAACGGAGGAAGGATAGTGGAGGAGGGGACCCATGATTCATTGGTGGCAAAAAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGGTAAGGCTTTGCGCCAGCATCGGCCTGTTTAG 4200 0.4288 MMGSRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDLGAETSATQPMEVEEEMEEADEIEPPPAAVPFSRLFACADHLDWFLMLVGSIAAAAHGTALVVYLHYFAKVLRVPQQGLPEEQFHRFKELALTIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRLLIIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSFNHDGSAPASVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNMKLEWLRNQIGLVTQEPALLSLSIRDNIAYGRDTTMDQIEEAAKIAHAHTFISSLDKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEDGQLVEMGTHDELLTLDGLYAELLRCEEATKLPKRMPVQNYKETATFQIEKDSSESHSFKEPSSPKMIKSPSLQRVSAIFRPSDGFFNSQESPKIRSPPSEKLMENGQSLDSSDKEPSIKRQDSFEMRLPELPKIDVQCVHRQTSNGSDPESPISPLLTSDPKNERSHSQTFSRPDCHSDDLLVKMSETKDARHRKQPSIWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTDYYRIDEAQHLQGEINKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNETGWFDEEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAFLIGVLLHWRLALVALATLPVLCVSALAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYQLQLNKIFKQSFLHGVAIGFGFGFSQFLLFACNALLLWYTALCVNKSYVDLPTALKEYIVFSFATFALVEPFGLAPYILKRRKSLMSVFEIIDRVPKIDPDDSSALKPPNVYGSIELKNIDFCYPSRPEVLVLSNFSLKVNGGQTIAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKQYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGKALRQHRPV* 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1959 1399 Gene3D ABC transporter type 1, transmembrane domain 61 384 IPR036640 GO:0005524|GO:0016021
Gso20g1959 1399 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 378 - -
Gso20g1959 1399 Pfam ABC transporter transmembrane region 832 1088 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso20g1959 1399 Pfam ABC transporter transmembrane region 84 353 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso20g1959 1399 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1150 1387 IPR003439 GO:0005524
Gso20g1959 1399 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 827 1119 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso20g1959 1399 MobiDBLite consensus disorder prediction 695 725 - -
Gso20g1959 1399 CDD ABC_6TM_Pgp_ABCB1_D2_like 822 1133 - -
Gso20g1959 1399 Gene3D - 1140 1394 IPR027417 -
Gso20g1959 1399 Gene3D - 393 646 IPR027417 -
Gso20g1959 1399 SUPERFAMILY ABC transporter transmembrane region 63 378 IPR036640 GO:0005524|GO:0016021
Gso20g1959 1399 SUPERFAMILY ABC transporter transmembrane region 814 1135 IPR036640 GO:0005524|GO:0016021
Gso20g1959 1399 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 370 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso20g1959 1399 PANTHER ABC TRANSPORTER B FAMILY 19 1395 - -
Gso20g1959 1399 MobiDBLite consensus disorder prediction 661 731 - -
Gso20g1959 1399 Pfam ABC transporter 1168 1316 IPR003439 GO:0005524
Gso20g1959 1399 Pfam ABC transporter 424 568 IPR003439 GO:0005524
Gso20g1959 1399 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 403 638 IPR003439 GO:0005524
Gso20g1959 1399 Gene3D ABC transporter type 1, transmembrane domain 794 1138 IPR036640 GO:0005524|GO:0016021
Gso20g1959 1399 MobiDBLite consensus disorder prediction 13 38 - -
Gso20g1959 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 637 IPR027417 -
Gso20g1959 1399 Coils Coil 249 269 - -
Gso20g1959 1399 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 19 1395 - -
Gso20g1959 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1139 1386 IPR027417 -
Gso20g1959 1399 MobiDBLite consensus disorder prediction 754 778 - -
Gso20g1959 1399 MobiDBLite consensus disorder prediction 754 790 - -
Gso20g1959 1399 SMART AAA_5 430 609 IPR003593 -
Gso20g1959 1399 SMART AAA_5 1177 1364 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1959 Gso-Chr20 50194163 50204315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1959 59 696 Calmodulin-binding Proteins AT2G36910 43.538 1.14e-162 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1959 K05658 - gmx:100799399 2677.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1959 20 50194163 50204315 Gso10g2552 10 52460362 52470383 GST