Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso20g1954 | ATGTCGTATCGCCCAAGCGGGAACTCCAGGACCGAGGTCCGCCGCAACCGGTACAAGGTGGCGGTGGACGCGGACGAAGGTCGGAGACGACGAGAGGACACGATGGTGGAGATCCGCAAGAACCGCAGAGAAGAGAGTTTGCAGAAGAAGAGGCGCGAAGGATTCCAACCTCAGCAGATACCTGCGTCCGTTCACTCTAGTTTGGTAGAGAAGAAGTTGGAACACCTACCATCTATGGTTACTGGTGTTTGGACTGATGATAATAACCTGCAGCTCGAGGCGACGACGCAGTTCCGGAAGCTGCTTTCGATTGAACGTAGTCCGCCGATTGAGGAGGTTATACAGACTGGTGTGGTTTCTCGCTTTGTTGAGTTTCTCATGAGGGAAGACTTTCCACAGTTGCAGTTTGAGGCAGCCTGGGCTTTGACAAATATAGCTTCTGGGACGTCTGAAAACACCAAGGTTGTCATTGATCACGGGGCTGTCCCAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGTGAACAGGCAGTGTGGGCATTAGGCAATGTCGCGGGGGATTCACCTAGATGTCGTGATCTTGTTCTCAGTCATGGGGCTTTGCTTCCTTTGTTGGCACAATTAAATGAACATGCCAAGCTTTCTATGCTTAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTGCCCGTCTTATCCATTCAAACGATGAAGAAGTATTGACTGATGCATGTTGGGCACTGTCATATCTTTCTGATGGCACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTGCTGCTGCACCCATCCCCTTCAGTGCTAATTCCTGCTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACTCAGGTTATCATCAATCACCAGGCTCTTCCTTGCCTTCTTAATCTGTTGACCAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCCAATATCACAGCTGGTAATAAACAGCAGATTCAGGCTGTGATTGAGGCTAATCTAATTGCTCCTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAGTTCCTAGTAAGCCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTGTCCTGATCCTAGAATTGTTACAGTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAACATAGGAAATACTGGTGATGTGAATCTATATGCCCAAATGATTGATGAAGCTGAGGGATTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACAGAGATTTACGAAAAGGCGGTCAAGATTCTTGAGACATACTGGTTGGAGGAGGAAGATGAGACTATGCCTCCAGGGGATGCTTCTCAGTCAGGGTTCAACTTTGGTAGCAGTGACGCTCCTGCTGTGCCGTCCGGTGGATTCAACTTTAATTAG | 1599 | 0.4653 | MSYRPSGNSRTEVRRNRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGFQPQQIPASVHSSLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSSDAPAVPSGGFNFN* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso20g1954 | 532 | SUPERFAMILY | ARM repeat | 14 | 501 | IPR016024 | - | |
| Gso20g1954 | 532 | Pfam | Importin beta binding domain | 14 | 96 | IPR002652 | GO:0006606|GO:0061608 | |
| Gso20g1954 | 532 | MobiDBLite | consensus disorder prediction | 41 | 60 | - | - | |
| Gso20g1954 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 160 | 202 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | PIRSF | Importin_alpha | 5 | 531 | IPR024931 | GO:0005737|GO:0006606|GO:0061608 | |
| Gso20g1954 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 117 | 160 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | Pfam | Atypical Arm repeat | 458 | 504 | IPR032413 | - | |
| Gso20g1954 | 532 | SMART | arm_5 | 190 | 232 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | SMART | arm_5 | 360 | 400 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | SMART | arm_5 | 403 | 443 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | SMART | arm_5 | 234 | 273 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | SMART | arm_5 | 275 | 315 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | SMART | arm_5 | 149 | 189 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | SMART | arm_5 | 106 | 147 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | SMART | arm_5 | 317 | 358 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | Gene3D | - | 12 | 52 | IPR036975 | GO:0006606 | |
| Gso20g1954 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 244 | 286 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | ProSiteProfiles | IBB domain profile. | 1 | 60 | IPR002652 | GO:0006606|GO:0061608 | |
| Gso20g1954 | 532 | Gene3D | - | 74 | 497 | IPR011989 | - | |
| Gso20g1954 | 532 | PANTHER | IMPORTIN SUBUNIT ALPHA | 4 | 522 | - | - | |
| Gso20g1954 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 276 | 314 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 404 | 441 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 191 | 232 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 245 | 272 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 360 | 399 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 107 | 147 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 149 | 188 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 318 | 358 | IPR000225 | GO:0005515 | |
| Gso20g1954 | 532 | PANTHER | IMPORTIN ALPHA | 4 | 522 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso20g1954 | Gso-Chr20 | 50139387 | 50144353 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso20g1954 | 153 | 422 | U-box Gene Family | AT1G23030 | 22.963 | 2.59e-06 | 48.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso20g1954 | K15042 | - | gmx:100797267 | 1063.14 |