Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1952 ATGGCGACGAGAAATCGCACTCTGCTTTTCAGAAAGCACAGAGATGCGTTGAAGAGTGTTCGGGTTCCCTCCATCTCCTCGCCGCCATTCACCGCTTCCGGCGCCGGCGGTGGCCCCGTCATCGAATTGGCCACCACCTCGTTTCTCAATCCCAATCGCTCTTACGCACCGCTAAGTACCGAGGATCCCGGCAATTCCAGTAGGGGTCCAAATGCAATTACAGTGGGGCTACCTCCGGCGTGGGTGGATTTATCAGAAGAAATATCAGCAAATGTGCAACGTGCACGCACAAAAATGGCAGAGTTGGCTAAGGCTCATTCAAAGGCTTTGATGCCATCATTTGGAGATGGTAAGGAAGACCAACGAGCTATTGAAACTCTAACACATGAGATAACTGACTTAATAAAGAAGTCCGAGAAGAGACTGCGGAGACTTTCTGCTACTGGGCCTTCTGAGGATTCCAATGTCAGGAAAAATGTGCAGCGCTCTCTTGCTACTGACCTTCAGAACCTCTCTGTTGAGCTCCGCAAGAAACAATCAACTTATTTAAAGCGCCTTAGACAGCAAAAAGAGGGTCAAGATGGAGTTGATCTAGAGATGTTAAATGGAAGTAAATCCAGATATGAAGATGATGACTTGGATAATATGGTATTTAATGAGCATCAAATGGCCAAGCTAAAAAATAGTGAAGCGTTCACAGTAGAAAGAGAAAAAGAGATCCAACAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATCGTTGATAGAATAGATTACAACATTCAGAATGTTGCAACCACAGTTGAGGATGGCCTTAAACAGCTGCAGAAGGCAGAGAGAACTCAGAAAAAGGGAGGCATGGTAATGTGTGCTACTGTGCTTCTCATCATGTGCTTCGTCATGTTGGTTCTCTTAATCATTAAGGAAATTATTTTGTGA 981 0.4506 MATRNRTLLFRKHRDALKSVRVPSISSPPFTASGAGGGPVIELATTSFLNPNRSYAPLSTEDPGNSSRGPNAITVGLPPAWVDLSEEISANVQRARTKMAELAKAHSKALMPSFGDGKEDQRAIETLTHEITDLIKKSEKRLRRLSATGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRQQKEGQDGVDLEMLNGSKSRYEDDDLDNMVFNEHQMAKLKNSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLLIMCFVMLVLLIIKEIIL* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1952 326 Coils Coil 85 105 - -
Gso20g1952 326 Pfam SNARE domain 266 318 IPR000727 -
Gso20g1952 326 ProSitePatterns Syntaxin / epimorphin family signature. 236 275 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso20g1952 326 Gene3D - 78 284 - -
Gso20g1952 326 SUPERFAMILY t-snare proteins 77 285 IPR010989 GO:0016020|GO:0016192
Gso20g1952 326 PANTHER SYNTAXIN 1 321 IPR045242 -
Gso20g1952 326 SMART tSNARE_6 225 292 IPR000727 -
Gso20g1952 326 CDD SNARE_syntaxin16 235 291 - -
Gso20g1952 326 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 230 292 IPR000727 -
Gso20g1952 326 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 321 - -
Gso20g1952 326 SMART SynN_4 72 187 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1952 Gso-Chr20 50131912 50136593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1952 1 326 SNARE and Associated Proteins AT5G26980 77.812 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1952 K08489 - gmx:100796741 629.017