Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1950 ATGGTTAGGGGAGGAAGGTTTAGTGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCGAAGGAGGGAGTTTCTGATGATTCGGATGAAGACTATGTGGTTTCAGATGAAGGTAGAGAGGCATCCGACTATTACTGCTCCTCCTTAGATGGATGCGCATCAGAGGAGGGTTTTGATAGTTTAATGGAAGAAGAGGAGGAGGAATTTCGAAGAGTGAGGAGTTTAAATAGATCCAAGTCAGAAAAGGGCATTGCTGGTCGGTGGAAAAATGGCATTAAAAACTCATACAAGAGGGGAAGGATTACATATGAAGAAGAAGAAGAAGAGGAAGAGGTAGAGGAAGAGTTTGAAGAGGAGGAGGAGGAGGAAATTCAAGAAGTGAGGAATTTCAATAGGTCAAAGGCCAAAAATGGTGTATGTAGTAAGAAAAAACGTGCAGGTAAAATCTCCCCAAAGAGGGGAAGGAAAATACGTGCAGAACATTTGGAAGAAGAGGAGGAGGAGGAAGAGGAGAAACAAGTGGTGGAGGATGAGGAGGAAGAGAAGGTGGAGAGAAGTGGAGATGAGGAAGAAGAACCAGAGGGAGATAGAGATGGAGAGGATGAAGATTTTGAATATGATGATGAGGATGATGAATTTTTGCCAGAGGAAGAAGATTATTCAGATGAGGAAGAAGAAATGGGGGGGAGAAAGAAGAAAAACGATGGCGTGAAAATGGAGAAGGAGGTTTTGCAGAAGAAAAGGGCCTCTGTGGTTTCTACTAGGGGTCGGAAAAGGCGGAGTTCTATAGCATCAAAGAAGCCCTTGAGAAACAAAAGAAGAAAGAATGGGAGGTTAAGGAAGAAACAAAAATGTGAAGATGATTTTATAGATAATGGCACAACCATAGGGACAACGACTAGGAGAAAGCAGGCCCAGAAGAGGAGAAGGGTGCTTCTTTCAGATTCAGATTATGCATCTTCTGGATCATCTGATTTTGAGTTTACCATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGAGATTGTGTGGAAATTTGAGAAATAACTTGAGGAGTTCATCCCATCTAATAAATAATGAAGAGGTTGGAGTCCATGAGTATCAACATCCGCAGCGGAAGCCTCCAGCTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCTGGGAAGAAAGGGTAAGGAAAAGGTGGAGGATTTAAAAAGTAAGGGAAAGCAAACATGTGGAATTTGTCTATCTGAAGAAGATAAAAGAAGAGTAAGGGGAGTACTAAATTGTTGCACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGCTGCCCTTTGTGTAAACAGAGATTCAAAACAATCAGCAAGCCTGCACGGTCAACGACGGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCTGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTAAGGAGCTATATTGATCCATATGAATATGTTATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTACTCTGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCGGGAAGTACCTGAAGGTAACTGGTATTGTGATGGATGTAGACCAGTTGCTTTGGGATCTTCAAGCTCCCAAGTTCAAGAAGGTGTGGCTGATCCAAGGGTATCTGTCCAGAGCCATCCTGTTAGACCACCCCCTGTTCTACATGTACGAGAAAGTATAGACCTCAACTTGATTTCGTCACCCCGTGCTGCTTTTAATCAAGGTTTTGGGCATCTTCCATCTTCTAGATTTAGTGGCAGAAGTGCTGAAGGAGCCTCTCCTGTATCTGGAGGGGCACCAACTTTATCAGAGAGACGCTGGATACACCGTCAGATTCAACAACTACTTTCAATAGATAGGATGGCCTCTACACCTGGCAGAACCAATGGTATTTCTGCTACCAGTTCAACTAGTAACTTATATAGCTCTCACTTTGATCAAAGTAGGGGAACCACCACTCTGCATGCAAGGACACAGGATGTGGGAACATCATACCACACATTTTTTGATGAGAGATTATGCAACAATTCCTCCCCATTAATGCAGAATGGGGCATTATGGTCTGGACTTATGGGGACACCCCCAGTACCAGATTGTGAACAAGTTCATCAGTTCAGTAGATCAAACATTGTTCCTGATGGTGGCTTATCCCCTGCTGTCAGAGAAGAGAGTAACTTTCACTTTGCAAAGGAGCAGTTGCAGTCAATGGTTAAAAGCCACTTGAAGAGCTTGTCTCAAAATATTGATTTAGGCCACAATACTATCAAGGATATTGCAAGGAGTTCTATGCACACCATACTAGCAGCTTGTGATCTTGAGCACATGAAGAGTGAAGTTTGCACTGTGCCTCCTCCATCTGCCTGTTCCCATATGGAGCTAATGGCTGGTGGGCAAACGAGTCTAATTAAAGGTTGCTGCTCATCTTGCTTTGATTCCTTTGTAGGAGATGTGGTGAAGAGGATTTTGGACACAAGAATTTCGTCACAGTGGTTACGATTAGGTCTTTAG 2577 0.4342 MVRGGRFSGKRNFRKRVRSKEGVSDDSDEDYVVSDEGREASDYYCSSLDGCASEEGFDSLMEEEEEEFRRVRSLNRSKSEKGIAGRWKNGIKNSYKRGRITYEEEEEEEEVEEEFEEEEEEEIQEVRNFNRSKAKNGVCSKKKRAGKISPKRGRKIRAEHLEEEEEEEEEKQVVEDEEEEKVERSGDEEEEPEGDRDGEDEDFEYDDEDDEFLPEEEDYSDEEEEMGGRKKKNDGVKMEKEVLQKKRASVVSTRGRKRRSSIASKKPLRNKRRKNGRLRKKQKCEDDFIDNGTTIGTTTRRKQAQKRRRVLLSDSDYASSGSSDFEFTISEEEREQVREAKRLCGNLRNNLRSSSHLINNEEVGVHEYQHPQRKPPARKGKEKIEEPLGRKGKEKVEDLKSKGKQTCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVADPRVSVQSHPVRPPPVLHVRESIDLNLISSPRAAFNQGFGHLPSSRFSGRSAEGASPVSGGAPTLSERRWIHRQIQQLLSIDRMASTPGRTNGISATSSTSNLYSSHFDQSRGTTTLHARTQDVGTSYHTFFDERLCNNSSPLMQNGALWSGLMGTPPVPDCEQVHQFSRSNIVPDGGLSPAVREESNFHFAKEQLQSMVKSHLKSLSQNIDLGHNTIKDIARSSMHTILAACDLEHMKSEVCTVPPPSACSHMELMAGGQTSLIKGCCSSCFDSFVGDVVKRILDTRISSQWLRLGL* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1950 858 Coils Coil 61 81 - -
Gso20g1950 858 MobiDBLite consensus disorder prediction 366 397 - -
Gso20g1950 858 MobiDBLite consensus disorder prediction 224 247 - -
Gso20g1950 858 MobiDBLite consensus disorder prediction 250 279 - -
Gso20g1950 858 Coils Coil 99 132 - -
Gso20g1950 858 SMART PHD_3 499 544 IPR001965 -
Gso20g1950 858 MobiDBLite consensus disorder prediction 104 123 - -
Gso20g1950 858 MobiDBLite consensus disorder prediction 15 36 - -
Gso20g1950 858 Coils Coil 330 350 - -
Gso20g1950 858 CDD RING-HC_Topors 407 449 - -
Gso20g1950 858 SUPERFAMILY RING/U-box 396 455 - -
Gso20g1950 858 ProSitePatterns Zinc finger RING-type signature. 426 435 IPR017907 -
Gso20g1950 858 ProSiteProfiles Zinc finger RING-type profile. 407 449 IPR001841 -
Gso20g1950 858 SUPERFAMILY FYVE/PHD zinc finger 469 545 IPR011011 -
Gso20g1950 858 MobiDBLite consensus disorder prediction 136 154 - -
Gso20g1950 858 PANTHER F18C1.6 PROTEIN 162 847 - -
Gso20g1950 858 PANTHER F18C1.6 PROTEIN 1 154 - -
Gso20g1950 858 Coils Coil 151 184 - -
Gso20g1950 858 MobiDBLite consensus disorder prediction 102 285 - -
Gso20g1950 858 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 547 IPR013083 -
Gso20g1950 858 SMART ring_2 407 448 IPR001841 -
Gso20g1950 858 Pfam PHD-finger 499 545 IPR019787 -
Gso20g1950 858 PANTHER F18C1.6 PROTEIN 1 154 - -
Gso20g1950 858 PANTHER F18C1.6 PROTEIN 162 847 - -
Gso20g1950 858 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 470 IPR013083 -
Gso20g1950 858 Pfam Ring finger domain 406 449 IPR001841 -
Gso20g1950 858 MobiDBLite consensus disorder prediction 162 223 - -
Gso20g1950 858 ProSiteProfiles Zinc finger PHD-type profile. 497 546 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1950 Gso-Chr20 50121288 50125325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1950 405 452 C3H Transcription Factor Family AT2G39100 41.667 2.14e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso20g1950 PHD 4.3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1950 - - gmx:100797448 1498.03