Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1949 ATGAGTACGACTGAATTATCTAATATGAAGCAACCTCCTGTTCCGCTGGCAACCCTGATTGGCCAGGAGCTACGAAATGGAAAAATTGAAAAACCTTTTGTGAAGTATGGGCAGGCTGGCTTGGCAAAGAAAGGAGAAGATTACTTTTTAATCAAGACAGATTGCCAGAGAGTTCCTGGGGATTCATCAACACTCTTTTCTGTCTTTGCGATCTTTGATGGGCACAACGGTATATCTGCTGCTATTTTTGCGAAGGAAAGCATACTAAGTAATGTTTTGAGTGCAATACCGCAAGATATGGGTAGGGATGAGTGGCTTCAAGCTCTGCCTCGTGCTCTAGTTGTTGGTTTTGTAAAAACTGACATAGAGTTTCAGAAAAAAGGGGAAACTTCTGGAACAACAGCTACATTTGTTCTGATTGATAGATGGACTGTTACTGTTGCATCCGTTGGGGATTCCCGTTGCATATTAGATACTCAAGGAGGTGTTGTTTCTCTCTTGACAGTTGATCACAGATTGGAAGAAAATGTAGAAGAGAGGGATCGCGTTACTGCCAGTGGTGGTGAAGTAGGAAGACTCAATGTATTTGGAGGCAATGAGGTAGGGCCTCTTCGCTGCTGGCCTGGTGGATTGTGCCTTTCTAGATCAATTGGTGACACGGACGTGGGAGAATTTATTGTGCCAATACCACATGTTAAGCAAGTGAAGCTTTCAAATGCTGGTGGAAGACTTATTATAGCTTCTGATGGTATTTGGGATGCTTTATCTTCTGATATGGCTGCCAAGTCATGCCGAGGTGTACCTGCAGAGCTTGCTGCAAAGCTGGTGGTTAAGGAAGCTTTAAGGTCAAGAGGTCTGAAGGATGATACAACTTGCCTCGTTGTAGATATTATTCCTTCAGATCATCCCGTGTTGCCAACAATTCCAAGAAAGAAACGTAACGTGCTAACTTCCCTTCTCTTTGGAAAGAAATCTCAAAACTCTACAAACAAAGGCACCAATAAGCTTTCTGCGGTTGGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGGTTAGGCAAGGATTTTCCATCTAATACGAATCCTGAGATTTTCCGCTGTGCGGTTTGCCAAGCAGATCAGCCCTCTGTGGACAGTTTATCAATGAACACTGGGCCTTTTTTCCCCCCAGTATCTAAGCCATGGGAAGGTCCATTCCTCTGCACAAACTGTCAGAAGAAGAAAGATGCCATGGAAGGAAAAAGGTCTACTAGGCCCTCGGAGACAGCATAG 1287 0.4398 MSTTELSNMKQPPVPLATLIGQELRNGKIEKPFVKYGQAGLAKKGEDYFLIKTDCQRVPGDSSTLFSVFAIFDGHNGISAAIFAKESILSNVLSAIPQDMGRDEWLQALPRALVVGFVKTDIEFQKKGETSGTTATFVLIDRWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENVEERDRVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGVPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDHPVLPTIPRKKRNVLTSLLFGKKSQNSTNKGTNKLSAVGVVEELFEEGSAMLTERLGKDFPSNTNPEIFRCAVCQADQPSVDSLSMNTGPFFPPVSKPWEGPFLCTNCQKKKDAMEGKRSTRPSETA* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1949 428 Pfam Protein phosphatase 2C 63 281 IPR001932 -
Gso20g1949 428 SMART PP2C_SIG_2 50 297 IPR001932 -
Gso20g1949 428 ProSiteProfiles PPM-type phosphatase domain profile. 25 297 IPR001932 -
Gso20g1949 428 CDD PP2Cc 43 297 IPR001932 -
Gso20g1949 428 Gene3D - 34 301 IPR036457 -
Gso20g1949 428 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 426 - -
Gso20g1949 428 PANTHER ALPHABET, ISOFORM E-RELATED 2 426 - -
Gso20g1949 428 SMART PP2C_4 23 295 IPR001932 -
Gso20g1949 428 SUPERFAMILY PP2C-like 38 297 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1949 Gso-Chr20 50107664 50110979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1949 1 427 PP2C-type Phosphatase Gene Family AT1G09160 75.410 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1949 - - gmx:100794630 857.055