Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1943 ATGTCGTCTGAGCCACTGCTTCCACCGTCGGAAGCATTGCCAGAATCTCACCACCCCTCCCGGCGATGCGGCGAACCGGCGTGGATTTTCGAAGAATTGCCGACGGCGACCATCGTTTCCGTGTCGAGACCAGAGACCGGAGACATTAGTCCAATCCTACTTTCTTATACCATTGAGTTGCAGTACAAACAGTTCAAGTGGCGTCTAGTGAAGAAGGCATCACAACTTCTCTATTTACAGTTCTGTTTGCGGAAACGTGCATTAATTGAAGATTTTCATGACAAGCAAGAGCAGTTAAAAGAATGGCTTCACAACTTAGGAATAGTAGATCAAACGGTAATGGTACAAGATGACGAAGAACCTGATGATGGAGCTGTGCCTTTACACCATGAAGACAGTGTTAAAAACAGATATGTTCCATCTGTTGCTGCTCTATCAATAATCCGTCCATCAATAGGAGGGCAGCAGACAATTGCAGATAGAGCCAAAGTCGCAATGCAGGGTTATTTGAATCGATTCTTGGGAAACCTGGATATTGTGAATTCTCAAGAGGTCTGCAGGTTTTTGGAAGTCTCCAGGCTATCCTTTTTACAGGAGTATGGTCCCAAACTGAAAGAGGGATATGTAATGGTGAAGCATTTGTCAAATATTTCACAGGATTCAGATGTATCATGCTTCCCATGCAATTGGTTTCACTGTTGTAATAACAGCTGGAAGAAGGTATGGTCTGTTTTGAAACCTGGGTTTTTGGCCTTCCTGGATGATCCCTTTAACAACAAACCACTGGATATAATGATTTTTGATATCCTCCCTTACTCAAATGGAGATGGAGGGACCAAAATATTTTTAGCTGATCCTGTAAAAGAACGCAACCCTTTGCGTTACACATTCAAGGTTACTAGTGGAAATAGGAGCATATTGTTGAGAACTACCAGCAGTGCTAAAGTAAAAGCTTGGGTTACTGCAATCAATGAAGCTAGTCTAAGACCTCTTGAGGGCTGGTGTTGTCCTCATCGCTTTGGTTCCTTTGCTCCCATAAGAGGTTTGACTGAAGATGGGAGCCAAGCCCAATGGTTTGTTGATGGACAGGCAGCATTTGAAGCAATTGCTACTTCAATTCAAGATGCAAAGTCAGAGATCTTCATTACGGGTTGGTGGTTGTGCCCAGAGCTATATCTGAGACGGCCTTTTGATAGCTTTTCTACCTCTCGGTTAGATTCATTACTAGAAGAAAAGGCTAACCAAGGGGTTCAGATCTATGTGCTTCTCTACAAGGAGGTTTCTCTAGCTTTAAAAATCAACAGCTTGTACAGTATGAGAAGACTGTTCAAAATTCATGAGAATGTGAGGGTATTACGCTATCCTGATCATTTCGCTGCTCGTGTGTATTTATGGTCACACCATGAAAAACTTGTAATTATTGATTACAAGATTTGCTATATCGGAGGATTAGATTTATGCTTTGGTCGATATGACACACCTGAACATAAAGTGGGTGACTGTCCTTCTGTAATATGGCCTGGAAAGGACTATTACAACCCAAGAGAATCTGAGCCAAATTCATGGGAAGACACCATGAAAGATGAATTGGATCGCAAGAAGTATCCCCGTATGCCATGGCACGATGTCCATTGTGCTCTTTGGGGACCTCCCTGTCGTGACATTGCTCGGCACTTTGTTCAACGTTGGAACCATGCTAAGAGAACTAAAGCTCCAAATGAACATGGAATTCCGCTACTTATGCCTCACCATCACATGGTCCTCCCTCATTACATGGGAAGAAGCAAAGAGATAGACATTGATGAAAAGAAAGACAAAGACAAGAGGAAAGGAATTGGCAGGCAGGATTCATTTTCCTCAGAGTCTCCAATGCAGGATATACCACTACTTTTGCCTCAAGAAGCTGATGGACTAGATACTTCAAATGGAGATCATACAAATTTAAGTGAAAATTTTCCATTGTTGTCCCAAAAGCTGGAGCATGAAACTTTAGTTTCAGACACCCAGATGAAAGGGTTTCAAGATGAAGTTGTTCCTTTAAACTTGGGGGCACAACCTGTTGCCAATGCTCTAGATGATTGGTGGGAAACACCAGAAGAAACCAATGATGACATTACTTTGGAATATGGAGAAGTTGGTCCACGTACTACCTGTCACTGTCAGGTAATCAGAAGTGTCAGCCAGTGGTCTGCTGGAACAAGTCAGCCTGAAGAAAGCATTCACACTGCATATTGTTCTCTTATTGAAAAAGCAAAGCATTTTATCTACATTGAGAACCAATTTTTCATATCAGGTCTAGCAGGGGATGACATAATACTCAACCGTGTTTTGGAAGCACTATACAGGCGTATTTTGCAAGCCCACAAAGATCAGAAAGATTTTAGAGTTATAATTGTGATGCCCCTCTTGCCTGGTTTCCAGGGTGGTCTGGATGATGGTGGTGCTGCTACTGTAAGAGCCTTAACACACTGGCAGTATCGAACAATTTCTAGAGAAAATCACTCCATATTAGACAATCTTGAAGCTATACTTGGTCCTAAGACACAAGATTATATTTCTTTCTATGGTCTACGATCTCATGGCAGACTTTATGAAAATGGCCCTGTGGCTACAAGTCAGGTATATGTGCACAGTAAATTGATGATAATTGATGACCGTATAGCTTTTATTGGATCATCTAATATAAATGACCGAAGTTTGCTTGGATTAAGAGACTCTGAGATTGGAGTGCTTATAGAAGACAAAGAATATGTTGACTCATTGATGAATGGAAAACCATGGAAGGCTGGGAAATTTTCCTACAGCCTCCGCTGCTCCCTATGGTCTGAGCACCTTGGTCTTCATGCCGGAGAGATCAGTAAAATCAGTGATCCGGTGGCAGATACAACCTACAAGGACTTGTGGTCAGCAACTGCAAAGGAAAATACTAGGATATACCATGAGGTCTTTGCTTGCATTCCCAACAATCAGATACACTCAAGAGCTGCACTTCGGCAAAGCATGGTTCACTGGAAAGAAAAACTTGGTCATACCACCATAGATATGGGAATAGCCCCAGATAAGTTGGTCTGTCATGAGAATGGAGAAATCAAAATAATAGACCCTATAGATAGGTTGAAGTCTGTGAAGGGACATCTTGTTTCCTTTCCCTTGGAGTTCATGCGTGAGGAAGATCTTAGACCAGCTGTTATTGAGAGCGAGTTTTATGTCGCTCCTCAAGTATATCATTAA 3231 0.4212 MSSEPLLPPSEALPESHHPSRRCGEPAWIFEELPTATIVSVSRPETGDISPILLSYTIELQYKQFKWRLVKKASQLLYLQFCLRKRALIEDFHDKQEQLKEWLHNLGIVDQTVMVQDDEEPDDGAVPLHHEDSVKNRYVPSVAALSIIRPSIGGQQTIADRAKVAMQGYLNRFLGNLDIVNSQEVCRFLEVSRLSFLQEYGPKLKEGYVMVKHLSNISQDSDVSCFPCNWFHCCNNSWKKVWSVLKPGFLAFLDDPFNNKPLDIMIFDILPYSNGDGGTKIFLADPVKERNPLRYTFKVTSGNRSILLRTTSSAKVKAWVTAINEASLRPLEGWCCPHRFGSFAPIRGLTEDGSQAQWFVDGQAAFEAIATSIQDAKSEIFITGWWLCPELYLRRPFDSFSTSRLDSLLEEKANQGVQIYVLLYKEVSLALKINSLYSMRRLFKIHENVRVLRYPDHFAARVYLWSHHEKLVIIDYKICYIGGLDLCFGRYDTPEHKVGDCPSVIWPGKDYYNPRESEPNSWEDTMKDELDRKKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRTKAPNEHGIPLLMPHHHMVLPHYMGRSKEIDIDEKKDKDKRKGIGRQDSFSSESPMQDIPLLLPQEADGLDTSNGDHTNLSENFPLLSQKLEHETLVSDTQMKGFQDEVVPLNLGAQPVANALDDWWETPEETNDDITLEYGEVGPRTTCHCQVIRSVSQWSAGTSQPEESIHTAYCSLIEKAKHFIYIENQFFISGLAGDDIILNRVLEALYRRILQAHKDQKDFRVIIVMPLLPGFQGGLDDGGAATVRALTHWQYRTISRENHSILDNLEAILGPKTQDYISFYGLRSHGRLYENGPVATSQVYVHSKLMIIDDRIAFIGSSNINDRSLLGLRDSEIGVLIEDKEYVDSLMNGKPWKAGKFSYSLRCSLWSEHLGLHAGEISKISDPVADTTYKDLWSATAKENTRIYHEVFACIPNNQIHSRAALRQSMVHWKEKLGHTTIDMGIAPDKLVCHENGEIKIIDPIDRLKSVKGHLVSFPLEFMREEDLRPAVIESEFYVAPQVYH* 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1943 1076 MobiDBLite consensus disorder prediction 599 615 - -
Gso20g1943 1076 SUPERFAMILY PH domain-like 234 328 - -
Gso20g1943 1076 MobiDBLite consensus disorder prediction 1 20 - -
Gso20g1943 1076 Pfam PH domain 205 327 IPR001849 -
Gso20g1943 1076 Pfam PLD-like domain 745 919 IPR025202 -
Gso20g1943 1076 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 463 490 IPR001736 GO:0003824
Gso20g1943 1076 CDD PLDc_vPLD1_2_yPLD_like_1 356 501 - -
Gso20g1943 1076 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 872 899 IPR001736 GO:0003824
Gso20g1943 1076 Gene3D Endonuclease Chain A 349 584 - -
Gso20g1943 1076 PIRSF PLD_euk 582 1076 IPR016555 GO:0004630|GO:0006654|GO:0048017
Gso20g1943 1076 PIRSF PLD_euk 36 592 IPR016555 GO:0004630|GO:0006654|GO:0048017
Gso20g1943 1076 PANTHER PHOSPHOLIPASE D 20 1073 IPR015679 -
Gso20g1943 1076 ProSiteProfiles PH domain profile. 202 328 IPR001849 -
Gso20g1943 1076 MobiDBLite consensus disorder prediction 599 626 - -
Gso20g1943 1076 CDD PH_PLD 180 326 - -
Gso20g1943 1076 CDD PLDc_vPLD1_2_yPLD_like_2 732 916 - -
Gso20g1943 1076 SUPERFAMILY Phospholipase D/nuclease 317 583 - -
Gso20g1943 1076 Gene3D Endonuclease Chain A 696 935 - -
Gso20g1943 1076 Gene3D - 201 332 IPR011993 -
Gso20g1943 1076 SMART pld_4 872 899 IPR001736 GO:0003824
Gso20g1943 1076 SMART pld_4 463 490 IPR001736 GO:0003824
Gso20g1943 1076 SMART PH_update 203 330 IPR001849 -
Gso20g1943 1076 PANTHER PHOSPHOLIPASE D ZETA 2 20 1073 - -
Gso20g1943 1076 SUPERFAMILY Phospholipase D/nuclease 711 922 - -
Gso20g1943 1076 Pfam Phospholipase D Active site motif 463 490 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1943 Gso-Chr20 50043548 50053866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1943 29 1076 Phospholipase D Gene Family (Wang group) AT3G05630 67.201 0.0 1424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1943 K01115 - gmx:100796914 2182.14