Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1940 ATGATGGAGGAAAACGGACAAAAGAAGAGGAGAATCGTCATCATCGGCGTCTCTGCCATCTTCCTAGTGGCTGTGGTCGTAGCGGTCGCAGTTGGTGTCAACCTAAATATAAAAGGTGGTTCCAACGATGATGCACAAGATAACAAGTCCCACGTTGCTTCCTCTGTGAAAGCGGTGAAAACCCTTTGCAAACCCACGGATTACCCGAAAGAATGCGAGAAAAGCCTGAGTGCAGAAGCTGGGAACACCACGGACCCAAGAGAACTCATTAAAATTGCCTTCAACATAACCATTAAGAAAATAGGTAACGGGCTCAAGAAAACGGATATCATGCACAAGGTTGAGAATGACCCTATATCCAAGATGGCACTTGACACATGCAAGCAACTCATGGATCTTTCCATTGATGAATTCAAGAGGTCACTCGAGAGAATGGGAAAGTTTGATCTCAACAACCTCGACAACATCCTCAATAGTTTAAGGGTGTGGCTTAGCGGTGCAATCACGTACCAAGACACATGCTTGGATGGCTTCAAGAACACCACCAACGAAGCAGGGAACAAGATGAAGAACCTGTTAACGAGTTCCATGCACATGAGTAGCAATGCCCTTGCCATCATCTCAGAGGTTGCAGACATTGTTGCGAAAATGAATGTGAACAAAGATGGGCATCGCGAGCTTGTTGAGGATTCTCGTGGGGGTGAACATGTTTTTGGTCACGAGGAGGTTATTCCCTCGTGGGTTGAGGAGGATGGTGTTGGTGTTCGTAGATTACTTCATGAAAGTCCTCACAAAGTCAAGCCTAATGTGGTTGTGGCAAAAGATGGTAGTGGAAAGTACAAGAGCATCAACCAGGCATTGAAGAAGGTGCCTGCGAGGAACCAAAAGCCATTCGTGATTTATATTAAGGAAGGTGTTTACCATGAGTACGTTGAAGTCACTAAGAAAATGACCCATGTGGTGTTTGTGGGTGATGGTGGCAGCAAGACACGAATCACCGGCAACAAAAACTTCGTAGATGGAATTAATACTTACAGAACAGCCTCTGTCGCAATTCTAGGAGATTACTTTATAGCCATCAATATAGGGTTTGAGAACTCTGCTGGCCCCGAAAAACATCAAGCAGTAGCCATAAGGGTCCAAGCAGACAGATCAATTTTCTATAAATGCTCAATGGATGGGTACCAGGACACATTGTATGCTCATGCCATGCGTCAATTCTATCGGGATTGCACCATTTCAGGCACCATTGACTTCGTGTTTGGTGATGCGGTGGTTGTTTTCCAAAACTGCACTTTCGTGGTCAGAAAGGCATTGGAAAACCAACAATGCATTGTGACGGCACAAGGCAGAAAAGAGAGGCACCAACCATCAGGAACAGTGATCCAAGGGAGTTCCATTGTGTCAAATCATACAGAGAAGTTTGATAACAAGGTTTACCTAGCGCGTCCATGGAAGAATCACTCGAGAACCATCTTCATGGACACTTACATTGGGGATTTGATTCAACCCGAAGGGTATATGCCATGGCAAGGACCAAGTGGCCTTTCGGGTATGGATAGTTGTTTCTATGCCGAGTACAATAACACTGGTCCTGGCTCAAACAAATCCAAGCGTGTAAAATGGCGCGGGATCATGACCCTCACCTTAGAATCCGTAAGCCATTACTTACCATACAAATTTTTTCATGGAGATGATTGGATTAAAGTCACTGGGATTCCTTACTCCTCTGCTGTCACAGCCCCCAATAAGCACTAA 1758 0.4516 MMEENGQKKRRIVIIGVSAIFLVAVVVAVAVGVNLNIKGGSNDDAQDNKSHVASSVKAVKTLCKPTDYPKECEKSLSAEAGNTTDPRELIKIAFNITIKKIGNGLKKTDIMHKVENDPISKMALDTCKQLMDLSIDEFKRSLERMGKFDLNNLDNILNSLRVWLSGAITYQDTCLDGFKNTTNEAGNKMKNLLTSSMHMSSNALAIISEVADIVAKMNVNKDGHRELVEDSRGGEHVFGHEEVIPSWVEEDGVGVRRLLHESPHKVKPNVVVAKDGSGKYKSINQALKKVPARNQKPFVIYIKEGVYHEYVEVTKKMTHVVFVGDGGSKTRITGNKNFVDGINTYRTASVAILGDYFIAINIGFENSAGPEKHQAVAIRVQADRSIFYKCSMDGYQDTLYAHAMRQFYRDCTISGTIDFVFGDAVVVFQNCTFVVRKALENQQCIVTAQGRKERHQPSGTVIQGSSIVSNHTEKFDNKVYLARPWKNHSRTIFMDTYIGDLIQPEGYMPWQGPSGLSGMDSCFYAEYNNTGPGSNKSKRVKWRGIMTLTLESVSHYLPYKFFHGDDWIKVTGIPYSSAVTAPNKH* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1940 585 CDD PMEI-like_3 61 211 - -
Gso20g1940 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 210 IPR035513 -
Gso20g1940 585 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 209 IPR006501 GO:0004857
Gso20g1940 585 SUPERFAMILY Pectin lyase-like 266 577 IPR011050 -
Gso20g1940 585 PANTHER PECTINESTERASE 10 581 - -
Gso20g1940 585 PANTHER PECTINESTERASE 10 581 - -
Gso20g1940 585 SMART PMEI_2 54 206 IPR006501 GO:0004857
Gso20g1940 585 Pfam Pectinesterase 269 565 IPR000070 GO:0030599|GO:0042545
Gso20g1940 585 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Gso20g1940 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 208 IPR035513 -
Gso20g1940 585 Gene3D - 263 579 IPR012334 -
Gso20g1940 585 Pfam Plant invertase/pectin methylesterase inhibitor 58 206 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1940 Gso-Chr20 50017463 50019907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1940 3 583 Carbohydrate Esterase AT3G05610 49.488 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1940 K01051 - gmx:100794799 1155.97