Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1932 ATGAGCGGGCGGTCAAGCCGCACAATTTATGTTGGCAATCTTCCTGGCGACGTTCGCTTGAGAGAAGTAGAGGATCTATTCTACAAGTATGGTCCTATTGTTGACATTGATTTGAAGATACCTCCGAGACCACCAGGCTATGCTTTTGTAGAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATTCAATATCGAGATGGTTACAATTTTGATGGTTTTCGGTTACGAGTTGAACTTGCACATGGTGGACGGGGATATTCATCATCAGTAGACCGTTACAGTAGCTATAGCGGTGGCAGTGGTAGCCGTGGAGTTTCCAGGCGTTCTGACTACCGTGTTCTGGTCACTGGATTACCTCCGTCTGCTTCATGGCAAGACCTGAAAGATCACATGCGTAAAGCTGGTGATGTGTGTTTTTCGCAAGTCTTCCGTGAGCGTGGGGGTATGACTGGGATAGTTGATTATACCAATTATGATGATATGAAATATGCTATCAGGAAACTTGATGACTCAGAATTCCGCAATGCCTTTTCTCGTGCTTTCATACGGGTGAGGGAATATGATCGAGGTTATTCTAGAAGTCCTAGTCGTGATTCAAGGAGGAGCTATTCTAGAAGCCTCAGCCGCAGTCCATGTATCTCACGAAGCCGCAGCCATAGCCGCAGCAGAAGTCATAGCTATAGTGACAGGAGCAGAAGTTGGTCTCCGAAACCAAAACACTCTCGACGTTCAATATCTCTTTCAAGATCCCAGTCAAGATCCAGATCTCCAAATTCATCACCTCGACCTCACCAAAGTCCAAGTAGCTCATCATAA 816 0.4596 MSGRSSRTIYVGNLPGDVRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIQYRDGYNFDGFRLRVELAHGGRGYSSSVDRYSSYSGGSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAFIRVREYDRGYSRSPSRDSRRSYSRSLSRSPCISRSRSHSRSRSHSYSDRSRSWSPKPKHSRRSISLSRSQSRSRSPNSSPRPHQSPSSSS* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1932 271 Gene3D - 2 110 IPR012677 -
Gso20g1932 271 Gene3D - 111 188 IPR012677 -
Gso20g1932 271 CDD RRM1_SF2_plant_like 8 79 - -
Gso20g1932 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Gso20g1932 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Gso20g1932 271 MobiDBLite consensus disorder prediction 189 271 - -
Gso20g1932 271 MobiDBLite consensus disorder prediction 247 271 - -
Gso20g1932 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Gso20g1932 271 SMART rrm1_1 112 181 IPR000504 GO:0003723
Gso20g1932 271 SMART rrm1_1 8 78 IPR000504 GO:0003723
Gso20g1932 271 MobiDBLite consensus disorder prediction 189 204 - -
Gso20g1932 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Gso20g1932 271 CDD RRM2_SF2_plant_like 111 186 - -
Gso20g1932 271 SUPERFAMILY RNA-binding domain, RBD 5 177 IPR035979 GO:0003676
Gso20g1932 271 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 258 - -
Gso20g1932 271 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1932 Gso-Chr20 49962204 49968312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1932 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.895 5.33e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1932 K12890 - gmx:100794282 370.163