Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1925 ATGGATGGCAACAACACAAGTTCGGCCCAAGTCATTGCAGAAATGATTGGAATGGGTTTTGATTATACCGATATCATGGAAGCCATAAAAGTAGCGGGTCCATCTATTCCCAGCGCCGTGGAACACATTCTCAACTCTACTGCCCGCACCCCCAAATTGCATGCACACAACGGGAGGAAGAAGACCGTTCTCAGAAAACAACCTTTTCGCTCGTGCCGTCAAGTTCGACAGTCCAAGATATTCGACCATTTCCACTCCAATGATGCCAAGGAGGAATCCCCTCAAATGGGAGTTGATCCCAATCCAATTGTGCTTTCAGAGCCATTTGAAGCTCAAGATTTGGATATTGCATATGATTGGGAGCAGAGAGTTAGCCTTCTGATGCAAAAGCATTTTGGTTTTTCATCCTTGAAGACTTTTCAGAAGGAAGCCCTCTCTGCCTGGCTTGCTCATAAAGACTGTCTTGTCCTCGCTGCAACAGGATCTGGGAAGTCTCTGTGCTTTCAGATTCCTGCATTGTTGTCTGGGAAAGTGGTGGTTGTGATTTCGCCCTTGATAAGTCTCATGCATGACCAGTGTTTAAAGCTAACAAGACACGGAATCAGTGCTTGCTTTCTTGGGTCTGGGCAACCTGACGATACTGTTGAGCAGAAAGCGATGGGGGGCTTGTATAGTATAGTGTATATTTGCCCGGAGACTGTATTAAGATTGATTGAACCACTGCAGAAGCTTGCAGAAAGTCATGGTATTGCTTTATTCGCCATTGATGAGGTACACTGTGTTTCTAAATGGGGTCATGATTTTCGTCCAGATTACAGACGACTGTCTGTGCTGAGGGAAAATTTCAGTGCTAGCAAGCTAAAATCCCTGAAATTTGATATACCTCTGATGGCCTTGACAGCTACAGCTACAAAAAGAGTTCGAGAAGACATCTTAAAATCATTACACATGTCAAAAGAAACGAATGTTGTTCTTACATCATTTTTTCGATCTAATTTGCGTTTCATGGTAAAGCATAGTCGAACATCACAGGCTTCTTATGCGAAAGATTTTCATGAATTGATTCAAGTATATGGTAGAAAGCAAAATATGACTGGAAATGAAAAGTATTTCATCTCAGATGATTCAGATCATGTTTCTAATAGCTCTGATGCCAGTAGTATCTCTGATACAGACAGTGTTTCACCTGATGACAACCAAGATGATTATGCTTATAAAGATATTAATATAATGCACTCAGGAAACACAGACGATTTTTTAACAGGAAGAGAATTGTCTGTTGATTTCCTGGAAAATGATGTTGATGTCTTTCAGAGTGTGGATAACTCAGATGTTACCTGTGGTGAATTTTGTGTACAACCTGCTCACAAGGAATGGGAATTATCTGAGACAATTGATCCACCAAAGAAACCAGAAGGAAGACTTAAATTTCTTAAAAAGCCTTTGGAACAAGGACCAGCAATCATATATGTACCCACCAGAAAAGAAACACTGAGAATTGCAAAGTATCTATGCAAGTTTGGTGTGAAAGCCGCTGCTTATAATGCAGGACTTCCCAAATTGCATCTAAGAAGGGTTCATGAAGAGTTTCATGAAAATACTTTAGAGGTTATTGTTGCTACAATAGCTTTTGGAATGGGTATTGACAAATCAAATGTCAGAAGAATCATTCACTATGGTTGGCCACAGAGTTTAGAAGCCTACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCAGATTGCATTCTGTATGCAAACCTGGCAAACAAGCCATCGCTTTTGCCTAGTCGGAAAAGTGAAGATCAGATGAAACAAGCATATATCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATGCTGTCGAGCAAAGATACTCGTTGAATACTTTGGAGAGGATTTCAGTCATCAGAAATGTCTCTTATGTGATGTGTGCATTGATGGTCCACCTCAAAGGCAGAATGTAAAAGAGGAGGCCTGTATTTTACTGCAAACTATTGGAGCCCATAATGAATGTAACAATTATTTGGATTGCTCATATGATGATGATATACATTTTCACTCCAAACATAGAGGACTGAGAGAGAGGCCAAATCTTCAGATATTGGTTGGCAAAATAAGGCAGCAGTTTCAGAAGTTTTTAACCACTGATATATTATGGTGGAGAGGTCTTGCTCGAATTTTGGAGGTTAAAGGATACATCGGGGAAGGAGATGACAAGACCCATGTTCAGGCAAAATACCTGGAGCCAACAGAATTGGGATTGGAATTTGTGAAGTCCATGAGTGAGCAAGATTTCTATGTTTACCCTGAGGCAGATATGTTGCTTGCAAGGAAAACTAACAAACCATTTTCCTCATTCTCGGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGGCGTGAGCGCTTAGAAAGAATGCGAGTCAATAGAAAGCCAGGGATGCTGCCAAGTCCCAAGAAGCAACGTAAGAGAAAAGCTAGAAAAGGTTGGGCTGGTTTGAGGACTTCTCGTGGTAGACTGGCAGCAAAACTCTCAAAACACAAGTGA 2565 0.4129 MDGNNTSSAQVIAEMIGMGFDYTDIMEAIKVAGPSIPSAVEHILNSTARTPKLHAHNGRKKTVLRKQPFRSCRQVRQSKIFDHFHSNDAKEESPQMGVDPNPIVLSEPFEAQDLDIAYDWEQRVSLLMQKHFGFSSLKTFQKEALSAWLAHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLTRHGISACFLGSGQPDDTVEQKAMGGLYSIVYICPETVLRLIEPLQKLAESHGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFSASKLKSLKFDIPLMALTATATKRVREDILKSLHMSKETNVVLTSFFRSNLRFMVKHSRTSQASYAKDFHELIQVYGRKQNMTGNEKYFISDDSDHVSNSSDASSISDTDSVSPDDNQDDYAYKDINIMHSGNTDDFLTGRELSVDFLENDVDVFQSVDNSDVTCGEFCVQPAHKEWELSETIDPPKKPEGRLKFLKKPLEQGPAIIYVPTRKETLRIAKYLCKFGVKAAAYNAGLPKLHLRRVHEEFHENTLEVIVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLANKPSLLPSRKSEDQMKQAYIMLSDCFRYGMNTSCCRAKILVEYFGEDFSHQKCLLCDVCIDGPPQRQNVKEEACILLQTIGAHNECNNYLDCSYDDDIHFHSKHRGLRERPNLQILVGKIRQQFQKFLTTDILWWRGLARILEVKGYIGEGDDKTHVQAKYLEPTELGLEFVKSMSEQDFYVYPEADMLLARKTNKPFSSFSEWGKGWADPEIRRERLERMRVNRKPGMLPSPKKQRKRKARKGWAGLRTSRGRLAAKLSKHK* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1925 854 MobiDBLite consensus disorder prediction 371 400 - -
Gso20g1925 854 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 321 IPR014001 -
Gso20g1925 854 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 6 46 IPR015940 -
Gso20g1925 854 MobiDBLite consensus disorder prediction 813 854 - -
Gso20g1925 854 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 1 842 - -
Gso20g1925 854 SMART ultradead3 133 338 IPR014001 -
Gso20g1925 854 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1 842 - -
Gso20g1925 854 Pfam DEAD/DEAH box helicase 140 307 IPR011545 GO:0003676|GO:0005524
Gso20g1925 854 Pfam RecQ zinc-binding 600 650 IPR032284 -
Gso20g1925 854 MobiDBLite consensus disorder prediction 822 838 - -
Gso20g1925 854 MobiDBLite consensus disorder prediction 371 394 - -
Gso20g1925 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 591 IPR027417 -
Gso20g1925 854 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 128 356 IPR004589 GO:0004386|GO:0006310
Gso20g1925 854 SMART helicmild6 498 579 IPR001650 -
Gso20g1925 854 Gene3D - 590 773 IPR036388 -
Gso20g1925 854 CDD DEXHc_RecQ 128 328 - -
Gso20g1925 854 Gene3D - 106 329 IPR027417 -
Gso20g1925 854 Pfam Helicase conserved C-terminal domain 475 578 IPR001650 -
Gso20g1925 854 Gene3D - 462 588 IPR027417 -
Gso20g1925 854 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 474 625 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1925 Gso-Chr20 49898758 49905783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1925 474 597 Eukaryotic Initiation Factors Gene Family AT5G11170 25.806 7.78e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1925 K10900 - gmx:100793222 1695.25