Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1921 ATGCTAAGTGCAAAGTTGGTTGCTTCCTCATATTCTCCTCCATGTGGGCTTATTCATTTTGGAATTAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGCCTCCATATTCTTGAGGAATTCAATGCGGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGCCAGTCAAAGGAAAAGGATGAAGTGCCTAAGGAAAGTAATGTTGGATCATGGAAGTCTAGGCAACATGCTAAGATAAAATTAGATTCTGAATTTGGAGTTGTAAGGGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTGAAAGTGTAGCGGGATATGTACATCGAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTGGTTTCTACGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTAGGGATGATGAAAACAAAGGCACAAATTCCATTGCTGAGTTTCCCCTCCTCACCAAGAATGCAGTTGAATCTTTACGGTACAGGGCTGAGGATGTTGCAAAGAGTGTAACTAGAATTGCTGTCCGAGAGTCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGCCCACTTCGAAACTAATCCAAAAGACCTAGATCTACTGAAGCATGACAAAGTTTTGAGCAAGAATCCACCACCTCCGCACCTACGTGATGTGCCTGAGTACCTATTAGACAAACCAACAAAAGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGATCCAAGAGAAAATTAA 798 0.4048 MLSAKLVASSYSPPCGLIHFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVPKESNVGSWKSRQHAKIKLDSEFGVVRGIDFKNVYTVINFEMPESVAGYVHRIGRTGRAYNSGASVSLVSTDEMDTLEEIRSFVRDDENKGTNSIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEILNSEKLKAHFETNPKDLDLLKHDKVLSKNPPPPHLRDVPEYLLDKPTKEAREMVKLARDPREN* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1921 265 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 27 213 - -
Gso20g1921 265 Pfam Helicase conserved C-terminal domain 17 125 IPR001650 -
Gso20g1921 265 CDD SF2_C_DEAD 17 134 - -
Gso20g1921 265 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 171 IPR001650 -
Gso20g1921 265 PANTHER RNA HELICASE 27 213 - -
Gso20g1921 265 Gene3D - 5 230 IPR027417 -
Gso20g1921 265 Coils Coil 195 215 - -
Gso20g1921 265 SMART helicmild6 11 125 IPR001650 -
Gso20g1921 265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 150 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1921 Gso-Chr20 49867326 49870024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1921 27 165 Eukaryotic Initiation Factors Gene Family AT3G19760 28.058 2.16e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1921 K14810 - gmx:100785831 508.449