Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1920 ATGGATAACGCGCGATCGGCCAACGGCGAGGAGAATGCGGCGGGAATTCCGGACGATTTGCGGTGCAAAAGGTCCGATGGTAAGCAGTGGCGCTGCACGGCGATGTCGATGCCAGACAAGACCGTCTGCGAGAAGCACTACATCCAGGCCAAGAAGCGCGCCGCCAATTCCGCAATGAGGGCCAACCTCAAGAAAGCGAAGAGGAAGTCGCATTCACTGTCGTTGAACGAGTCCGATAATGTTTATTTGGAGAGCAAGAGCGATGATTTCGACCTTCCTCTCTCCTCCATTGGCCTCTCGCAGAAGAAGCTCTCCAAGAACGAGTTTCGCTACGAGCCTGAGCGCGACGCGCGAAGAGGCTCGTCTGCGAGACGCGCTTCGAACCTCAACGATGATGATGATGATGATGATGATGATGTTGTCGTGGATGTGGATGGGGATGGGGATGGGGATGCGGCGCTCTATGAGGAAGAGAATTGGGTCTCCTATGATTCCCCGCCGGATTCTTCACGCAAGAGGTCTCGGAGGAGCTTGGAAGCTAATGCTGAATATTCGGATGGAACATCCGGTTCGTCTGACGAGGACACCGGCGGGCAGACTTGTCACCAGTGCCGGAGGAATGACCGCGATCGAGTTACTTGGTGTCAACGGTGTGATAGGAGGGGATATTGTGATAGCTGTTTATCAACATGGTACTCGGACATTTCATTGGATGAAATTCAGAGGATATGTCCTGCTTGCCGGGGTATATGTAATTGCAAGACTTGCTTGCGGAGTGATAATTCCATTAAGGTTCGGATACGCGAGATACCTGTTCTTGATAAGTTACAGTATCTCCACGTGCTGTTGTCGTCGGTGCTTCCGGTGGTAAAGCAGATCCACCATGAGCAGTGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCGAGGATAAAATTGAACACAGATGAGCAGATGTGCTGCAATTTCTGTAGGATACCTATTACTGATTATCATCGACGCTGTCCAAGTTGCTCATATGATTTGTGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAACTGCAGATCACAATAAAGAACCTCAAACAGAGCAAGCAAAAACTTCTGATCGAAATATATTAAGTAAATTTCCGCATTGGAGATCCAATGACAACGGAAGTATTCCATGTCCCCCTAAGGAGTATGGTGGCTGTGGTTATTCTTCATTAAATTTAAGCCGAATTTTCAAGATGAACTGGGTTGCAAAGTTGGTCAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTAATGCTGATGATCCACCGGAAACTGGGCGGAATGATCTCAGACTTTGCCAATATTCTCATAGAGAAGCCAGTGATGATAATTATCTTTATTGTCCAGCATCTGATGATATCAAAACTGATGGGATTGGCAGTTTTAGAAAGCATTGGAAAACTGGTGAGCCCATTATTGTTAAGCAAGTATTTGATGGGTCATCCATTTCAAGCTGGGATCCAATGGTCATATGGAGAGGGATTCTAGAGACAACAGATGAGAAAGCAAAAGATGAAAACAGGATGGTTAAGGCCATAGATTGCTTAGATGGGTCTGAGATTGATATTGAGCTTGCTCAGTTCATGAAAGGATACTTTGAAGGGCATATTCTTGAAAATGGTTGGCCGCAGTTATTGAAATTGAAAGATTGGCCTTCACCTAGCGCTTCTGAAGAATTTCTACTGTACCAAAGACCCGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATATATATATCTTATGGGATTAGTGATGAACTTGGTAGAGGTGATTCAGTGACAAATCTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTAAAGCTGAAGAACTGGCAGATAACTGAAATTGAAATGATGCAAAAAGATAAAGCTAATAAGGAATCGGAGGCAAAAGAATCGGACAGGGATCCTCAAATATCTTCAGGGGGGAGTTCACCTGATTCCTTACTTGGTACAAAAAGTAGTGGACTGGAAATGGACTCAAACCAGAATAAGTCAATCATGGATCAAGGGTTTGAAATTTATTCTAGTGCTGAAGGTAATACGGCCAATTGTAAACTTCCGTTCACACAAAATGGAGATGTCTTTGAGAAAACACATCCTGGAGTTCTTTGGGATGTTTTTCGCCGGCAGGATGTTCCAATATTGACTAAATATTTGAAAATACATTGGAAGGAATTTGGGAAGTCAGATGATCTAGGAAATGAATTTGTTGAATGGCCTCTTTATGATGGAGCTATTTTTCTTGACAAGCACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCAGCTGGTTGCCCTTTCCAAGCAAGGAATGTCCAGTCCAATGTTCAGTTGGGCCTTGATTTCTTATCTCCGGAAAGCGTGGGTGATGCTGTAAGATTGGCAGAGGAAATTCGCTGTCTACCTAATGAACATGAAGCAAAGCTTCAAGTTTTGGAGGTTGGGAAGATATCTCTTTATGCAGCAAGTTCAGCCATCAAAGAAGTTCAAAAACTTGTACTTGACCCAAAAGTTGGCGCAGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAATTACGAGAAGATGGTTAAGCGGAGGCAGATTACTTGTGCTTGA 2823 0.44 MDNARSANGEENAAGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSHSLSLNESDNVYLESKSDDFDLPLSSIGLSQKKLSKNEFRYEPERDARRGSSARRASNLNDDDDDDDDDVVVDVDGDGDGDAALYEEENWVSYDSPPDSSRKRSRRSLEANAEYSDGTSGSSDEDTGGQTCHQCRRNDRDRVTWCQRCDRRGYCDSCLSTWYSDISLDEIQRICPACRGICNCKTCLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHHEQCFEVELEKKLRGAEIDLPRIKLNTDEQMCCNFCRIPITDYHRRCPSCSYDLCLNCCRDLREATADHNKEPQTEQAKTSDRNILSKFPHWRSNDNGSIPCPPKEYGGCGYSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISNADDPPETGRNDLRLCQYSHREASDDNYLYCPASDDIKTDGIGSFRKHWKTGEPIIVKQVFDGSSISSWDPMVIWRGILETTDEKAKDENRMVKAIDCLDGSEIDIELAQFMKGYFEGHILENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTNLHFNMRDMVYLLVHTNEVKLKNWQITEIEMMQKDKANKESEAKESDRDPQISSGGSSPDSLLGTKSSGLEMDSNQNKSIMDQGFEIYSSAEGNTANCKLPFTQNGDVFEKTHPGVLWDVFRRQDVPILTKYLKIHWKEFGKSDDLGNEFVEWPLYDGAIFLDKHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESVGDAVRLAEEIRCLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKVGAEIGYGDPNLTAMVSENYEKMVKRRQITCA* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1920 940 MobiDBLite consensus disorder prediction 676 690 - -
Gso20g1920 940 ProSiteProfiles Zinc finger RING-type profile. 201 248 IPR001841 -
Gso20g1920 940 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Gso20g1920 940 Gene3D Cupin 462 879 - -
Gso20g1920 940 MobiDBLite consensus disorder prediction 1 20 - -
Gso20g1920 940 MobiDBLite consensus disorder prediction 108 203 - -
Gso20g1920 940 MobiDBLite consensus disorder prediction 131 154 - -
Gso20g1920 940 Pfam WRC 17 57 IPR014977 -
Gso20g1920 940 SUPERFAMILY Clavaminate synthase-like 483 877 - -
Gso20g1920 940 MobiDBLite consensus disorder prediction 691 716 - -
Gso20g1920 940 PANTHER JMJC DOMAIN PROTEIN JMJ24 8 929 - -
Gso20g1920 940 MobiDBLite consensus disorder prediction 108 130 - -
Gso20g1920 940 ProSiteProfiles JmjC domain profile. 574 870 IPR003347 -
Gso20g1920 940 SMART cupin_9 581 870 IPR003347 -
Gso20g1920 940 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 196 261 IPR018866 -
Gso20g1920 940 MobiDBLite consensus disorder prediction 181 198 - -
Gso20g1920 940 MobiDBLite consensus disorder prediction 676 716 - -
Gso20g1920 940 Pfam JmjC domain, hydroxylase 801 849 IPR003347 -
Gso20g1920 940 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 8 929 IPR045109 GO:0032454|GO:0033169
Gso20g1920 940 Coils Coil 670 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1920 Gso-Chr20 49855158 49864241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1920 17 57 GRF Transcription Factor Family AT3G13960 46.341 2.71e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso20g1920 JmjC 1.2e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1920 K15601 - gmx:100792166 1857.8