Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1919 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCTACAGAGAATACCAGAGAAGATGCAGTAGTTAAGCAGCAACCTGAGATACTTGGTCAGTTCCATAGTCCACATTCTCATACTTCAACTACAACAACAACAAATAATAGCAATGGTTCCAACACAGACTCACAATCACCTGCACCTGTTAAGAAGAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTTATTGCTTTATCACCGACCACACTAATGGCTACGAACAGGTTCATATGTGAAATCTGCAACAAAGGATTTCAAAGAGACCAAAACCTTCAGTTGCACCGGCGAGGCCACAACTTGCCATGGAAGCTCAAGCAGAGAACCAGCACAGAAATTCGAAAGAGGGTTTACGTGTGTCCAGAACCTTCGTGCGTCCACCACAACCCAGCAAGAGCACTCGGTGATCTCACTGGTATCAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCTGTTCAGTCTGACTGGAAAGCCCACTCAAAAATATGTGGTACAAGGGAATACAAATGTGACTGTGGTACCATCTTTTCCAGAAGAGACAGCTTCATTACGCACAGAGCATTCTGTGACGCACTAGCGGAGGAGAACAACAAAGCCAACGAAGGACAATTGCCAAAGATAGGTCCAAACTTGCAATGCCAACAAATCCCAAACCTCGTTTCATCATCATTACCAATCAACACCAACATTGTTCCCAACCCACAAATGGGTGGCACCTCGGAGTTCAACCATGCTGATCACAAGCACCCACTATCACTCCCACACGAGCTCATGCCAATGCCTGCACAAAAATCCTTCAACAACATGGCTGCAGGAACAACAGTGTTCACGAGAAGCCTCTCATCAACCTCCTCTCCCTCTCTTCAACTAAGCTCAAACATGTTCGAGGAAAACGGGCTCCACCTTGCAGCAGGGTCGCCACACATGTCAGCCACTGCGTTGTTGCAAAAAGCTGCACAAATGGGAGCAACAGTGACAGAAAAAACCTTTGTAACAAACATGGCACCACCATCGTTTGGTGTGCTGCAACAGCATCATCAACAACCAAATGGACAACCCTTCATGAACCAATACATGCACAGTGGCCAGCAACAACAAGATGTTAACATTTCTGCTCAGTATAATAGTTTCGGTGCAAATGGGATGGGTGGAGGGAGCGTTGGGATGAACGGTGTGGACATGTTCAACGCTATTTTGGACCAAAGCAAGGCTTTGTCGAAGATCATGGAGCAAAACAATAGAAGCAGTAGTGGAGGACCAACAAATGGAGGTTCGAATAGTAGTGCTATTAACGTTGCTGGAAGTAAAGGAGGTAGTGGGGATGTTATGACTCTTGACTTTTTGGGCATAGGAGGAGGAGGAGGAGGTGGTGGTGGTGGTGGGGATGCACATGGAAATTTCTATGGTGGTGCTCAACAAGGGGAAACTGGTGCACCGGACGTGGTTTGGAGAAACTGGTCTAGTAAGAACGCAGGGTTTGAATCATTTTCAGCAACGAGCAGCATTTGA 1590 0.4623 MSNITSCDSGSFSTENTREDAVVKQQPEILGQFHSPHSHTSTTTTTNNSNGSNTDSQSPAPVKKKRNLPGNPDPSAEVIALSPTTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLPKIGPNLQCQQIPNLVSSSLPINTNIVPNPQMGGTSEFNHADHKHPLSLPHELMPMPAQKSFNNMAAGTTVFTRSLSSTSSPSLQLSSNMFEENGLHLAAGSPHMSATALLQKAAQMGATVTEKTFVTNMAPPSFGVLQQHHQQPNGQPFMNQYMHSGQQQQDVNISAQYNSFGANGMGGGSVGMNGVDMFNAILDQSKALSKIMEQNNRSSSGGPTNGGSNSSAINVAGSKGGSGDVMTLDFLGIGGGGGGGGGGGDAHGNFYGGAQQGETGAPDVVWRNWSSKNAGFESFSATSSI* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1919 529 MobiDBLite consensus disorder prediction 437 460 - -
Gso20g1919 529 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 6 479 - -
Gso20g1919 529 MobiDBLite consensus disorder prediction 1 20 - -
Gso20g1919 529 MobiDBLite consensus disorder prediction 31 61 - -
Gso20g1919 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Gso20g1919 529 Gene3D Classic Zinc Finger 71 137 - -
Gso20g1919 529 Gene3D Classic Zinc Finger 147 226 - -
Gso20g1919 529 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Gso20g1919 529 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 6 479 - -
Gso20g1919 529 SMART c2h2final6 92 114 IPR013087 -
Gso20g1919 529 SMART c2h2final6 133 163 IPR013087 -
Gso20g1919 529 SMART c2h2final6 168 188 IPR013087 -
Gso20g1919 529 MobiDBLite consensus disorder prediction 1 76 - -
Gso20g1919 529 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Gso20g1919 529 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1919 Gso-Chr20 49848616 49852571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1919 52 350 IDZ Gene Family AT3G50700 56.923 3.51e-120 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso20g1919 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1919 - - gmx:100785295 988.023