Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1917 ATGGATCAGGATGTGCAAGATAGAGCGTTGCCGATTGCAAATGTGGGTCGAATCATGAAGCAAATTCTTCCCCCCAGTGCAAAGATCTCTAAAGAAGGGAAACAACTAATGCAAGAGTGTGTGACAGAGTTCATAAGTTTCGTGACTGGTGAGGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAATGGGGATGACATCTGTTGGGCTCTAAGTTCCTTAGGGTTTGACAACTATGCTGAGGCCATTGGAAGGTACTTGCATATATACAGGCAAGGTGAAAGGGAGAAAATCAATCACACCAAAAAGTATGAAAACCCTCAGAACCAAACTCAAATCAACCGTGCTCCACCACCACCACTACTTCTGTCTAGGGTTGAAAACCCTCCTCCTACAAATCAATCTGGATGA 417 0.446 MDQDVQDRALPIANVGRIMKQILPPSAKISKEGKQLMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYAEAIGRYLHIYRQGEREKINHTKKYENPQNQTQINRAPPPPLLLSRVENPPPTNQSG* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1917 138 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 116 - -
Gso20g1917 138 MobiDBLite consensus disorder prediction 100 138 - -
Gso20g1917 138 Gene3D Histone, subunit A 1 119 IPR009072 GO:0046982
Gso20g1917 138 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 73 IPR003958 -
Gso20g1917 138 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gso20g1917 138 SUPERFAMILY Histone-fold 6 110 IPR009072 GO:0046982
Gso20g1917 138 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso20g1917 138 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Gso20g1917 138 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Gso20g1917 138 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1917 Gso-Chr20 49817986 49819199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1917 6 116 CCAAT-HAP3 Transcription Factor Family AT1G09030 68.468 3.75e-56 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso20g1917 CBFD_NFYB_HMF 2.5e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1917 K08065 - gmx:100791116 287.345