Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1913 ATGCTTTGCTTTTTGGTTCAAAGACATAAGAGCTCAATGGCACCAACAAGGAAATCTAGAAGTGTGAATAAACGGATGTCAAGTTCAAATGACAATTCCCCTGAGAAAGATGGAATTAATTCAAATAAAAACAAGCTGCGGAAGAAAAAGTTGACCGATAAATTGGGATCTCAGTGGAGCAAGGAGGAACTAGAGCGATTTTATGAAGCATATAGGAAGTATGGGAAAGATTGGAAGAAGGTGGCTGCTTTTATACGTAATAGATCTACTGAAATGGTAGAAGCTCTTTACAATATGAATCGGGCATACCTCTCTCTGCCAGAGGGGACAGCTTCTGTTGTTGGCCTCATAGCGATGATGACAGATCACTACAATGTGATGGAAGGGAGTGATAGTGAAAGGGAGAGCAATGATGCACCAGGATCTCAAAAACCTGTAAAACGAAAGCATGAAGAAGTTCAGCTTAGTGTCTCTAAAGATCAGTCTCATTCAATTGCTTCTAGAGATGATTGCCTCTCTATATTGAAGAAGAGACGCTTTGATGGTATGCAGCTCAAGCCTTATGCTGTTGGTAAAAGGACTCCTCGCGTCCCGGTTTATAAGAAAGACGATACAGAAAATTATGTTTCACCTTATAGAAGAAGCCTGAAGTCGACTATTGATGCTAATGATGATGAAGTTGCTCATGTTGTAGCTTTGGCATTAACTGAGGCTGCACACAGAGGAGGCTCTCCACAAGTTTCTCAAACACCATCTAGAAGAGTAGAGCAAAAATCCTCTCCCATCCAGAGCTTGGAAAGAAAGCACCAAATGTCAGAGACAGCTTGTGCCAAGTTTCATGATGTTTCTGTGGATGAAGAGGTTTTAGAAAGTAGTATAGAAAGCAGGGGAGCTGAAAATGGAGAATATGCAAGAGATAATAGTTCATTGATGGATACAGAAGGCATAAGCACTGTTAAAGTTTTTCAGAAGAGGAAAAAATTTTATAGAAAGAGAGAGAGAGTGGAAAATGTGGGAAATCATCAACTTGATGATGGTGGGGAAGCATGTAGCGGCACTGAAGAAGGACTTAGTTTTAGTTCACTGAAGGAAAAGGTTGATATTGATGTTACTAATGAAAAACTTGAAAAATTCTCTCCAAAAAGTCAGAGGAAAAGAAACAAGAAACTCTTCTTTGGAGATGAAACCCCTGCCTTGAATGCGTTGCAAACTTTGGCTGATCTGTCTCTAATGATGCCAATATCTACAATGGAATCTGAATCATCTATCCAGTTTAAGGGCGAAAGAATGGTTGCTGATAAGAATAATAAGTCTGCTTTACTTGAAGCAACATCAACAAACCATAAGAGACATCAACTTAAACACAGTGCGGTCCCTGAAATTGAGGTTTCAACCTCCAAAAAGTCTAAGATTGGAAAGGAATCGACAAAGGATACTAATGTTCTCTCTGAATCAAAAGGGAAACTTCCATTTGCTGATACAACATGGAAAAAAAAGCGGAAGTCTATGGGTTCAAAGGTTGCAAATGCAAAGCTTGATTCTTATCCAAGTGGTCCCTTGAAAGATGAGGCCTTAGATGACGATAACAAACCAGTGGTTAAAGGAAAACACACTGACCAGGCTTTTACCCTACCAAAGCAATTGAAGACAGTTAAATCATCAGAGAGTTCCTTTTGCAGTGATCAGAAAGATTTGACAGTATCAACTGCAGAAGTTCCACTTTTGAATGAAGTTAGTTTACCAACTAAACGAAGTAGACGAAAGATGATTTTACAGAGAACTTCCTTGCCTAAGGAAAAGTCTTCTGATTACATATTGAAAAGTCAACCTAATAAGTACTCTACCCTTAAGGCAAAGGTTTCTAGTTGCTTGGCATCTAATATGGTTCGCAGATGGTTTATTTTTGAATGGTTTTACAGTGCAATTGATTATCCATGGTTTGCCAAAAGGGAATTCATGGAGTACTTAAATCATGTTGGACTAGGGAATATCCCAAGGTTAACTCGTGTCGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCCCGCAGGTTTTCTGAACACTTTCTATGTGAAGAAAGGCATAAACTTGAACAGTATCGGGAATCAGTGAGGAAACATTACACTGAACTGCGGACTGGTATTAGGGATGGACTTCCAACTGATTTAGCCAAACCATTATATGTTGGACAACGTGTAATTGCTCTTCATCCAAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACCGTTGACTATGACAAGTGCAGGATTCAGTTTGACCGTCCTGAATTAGGTGTTGAATTTGTAATGGACATTGATTGCATGCCTTTGAATCCATCAGATAATATGCCAGAAGCTCTGAGGAGGCATATTGGTTCCCAAAAAGCCTCTTTCATGAATAAAGAACCACAAATTAATGGAAATTCAAATTTTGGGGGCTGCGAAATGCATTCCTTTCCCGTGAAGGCAAAGGTTGCTACCGTTGATAACCTCTGTGCACAAGCTGGTTGTGCTCAACCATGTAAAGTAACACACCATCAAGCTAAGGAAGCTGACATACATGCAGTTTCTGAATTAAAGCGTGCTCTAGATAAAAAGGAGACATTGTTGATGGAGCTTCGAAGTGCAAATAGCGACATATTGGAAAACCAAAATGGCATAGAATGCTTAAAAGATTCCGAGGTTTTCAAGAAGCATTATGCCACGGTACTGGTAGAGCTAAAGGAAGCCAGTGGACAGGTTTCTGATGCTATGCTACAACTGAGGCAACGCAATACTTACAGAGGAAACTCTCTGCCACCCTGGATGAAGCCACAAGCAAGTTTCAATGTTCACGATGATCTTCCTGGTATGTTGGATAGTTCTCTAACACAAGAGTTAGGGTCAACTGTTGTTCAAGTTATTAAAGGATCCAGGCTAAGGGCACATGCAATGGTAGATGCTGCATTTGAGGCATTGTCTTTGACAAAGGAAGGTGAAGATGCCTTCATAAAGATTGGGCAAGCATTGGATTCTATAAATCATCAGCAGTTAGCCTCCAAGTCTAGGTTACCTGTGATCAGGTCTCAAGAGCAAGTGAATGTGAATGGCAGTTTTTATCATCTTAGTCATTCAACTAGCGGTGTATCAGAACCTATACTCAATGATCCATCAGTTCCAAAACCACATAATTATTCTGACAAATTTGATACTGAACTTCCGTCAGATCTTATCGCTTCATGTGTTGCCACATTAATCATGATTCAGACTTGTACTGAACGGCAATACCCTCCAGCTGATGTGGCTCAGATATTAGATTCCGCCGTTACTAGTCTGCATCCATGCTGTCCTCAAAACCTTCCTATTTACAGAGAAATTCAAATGTGCATGGGAAGAATCAAAACCCAGATGTTAGCTCTCATCCCTACTTGA 3414 0.4007 MLCFLVQRHKSSMAPTRKSRSVNKRMSSSNDNSPEKDGINSNKNKLRKKKLTDKLGSQWSKEELERFYEAYRKYGKDWKKVAAFIRNRSTEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVMEGSDSERESNDAPGSQKPVKRKHEEVQLSVSKDQSHSIASRDDCLSILKKRRFDGMQLKPYAVGKRTPRVPVYKKDDTENYVSPYRRSLKSTIDANDDEVAHVVALALTEAAHRGGSPQVSQTPSRRVEQKSSPIQSLERKHQMSETACAKFHDVSVDEEVLESSIESRGAENGEYARDNSSLMDTEGISTVKVFQKRKKFYRKRERVENVGNHQLDDGGEACSGTEEGLSFSSLKEKVDIDVTNEKLEKFSPKSQRKRNKKLFFGDETPALNALQTLADLSLMMPISTMESESSIQFKGERMVADKNNKSALLEATSTNHKRHQLKHSAVPEIEVSTSKKSKIGKESTKDTNVLSESKGKLPFADTTWKKKRKSMGSKVANAKLDSYPSGPLKDEALDDDNKPVVKGKHTDQAFTLPKQLKTVKSSESSFCSDQKDLTVSTAEVPLLNEVSLPTKRSRRKMILQRTSLPKEKSSDYILKSQPNKYSTLKAKVSSCLASNMVRRWFIFEWFYSAIDYPWFAKREFMEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLCEERHKLEQYRESVRKHYTELRTGIRDGLPTDLAKPLYVGQRVIALHPKTREIHDGSVLTVDYDKCRIQFDRPELGVEFVMDIDCMPLNPSDNMPEALRRHIGSQKASFMNKEPQINGNSNFGGCEMHSFPVKAKVATVDNLCAQAGCAQPCKVTHHQAKEADIHAVSELKRALDKKETLLMELRSANSDILENQNGIECLKDSEVFKKHYATVLVELKEASGQVSDAMLQLRQRNTYRGNSLPPWMKPQASFNVHDDLPGMLDSSLTQELGSTVVQVIKGSRLRAHAMVDAAFEALSLTKEGEDAFIKIGQALDSINHQQLASKSRLPVIRSQEQVNVNGSFYHLSHSTSGVSEPILNDPSVPKPHNYSDKFDTELPSDLIASCVATLIMIQTCTERQYPPADVAQILDSAVTSLHPCCPQNLPIYREIQMCMGRIKTQMLALIPT* 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1913 1137 MobiDBLite consensus disorder prediction 16 37 - -
Gso20g1913 1137 ProSiteProfiles Myb-like domain profile. 57 98 IPR001005 -
Gso20g1913 1137 SMART sant 55 103 IPR001005 -
Gso20g1913 1137 Pfam DIRP 637 738 IPR033471 -
Gso20g1913 1137 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 13 1137 IPR028306 -
Gso20g1913 1137 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 93 IPR017930 -
Gso20g1913 1137 ProSiteProfiles SANT domain profile. 54 91 IPR017884 -
Gso20g1913 1137 Pfam Myb-like DNA-binding domain 57 94 IPR001005 -
Gso20g1913 1137 MobiDBLite consensus disorder prediction 129 164 - -
Gso20g1913 1137 SUPERFAMILY Homeodomain-like 53 102 IPR009057 -
Gso20g1913 1137 SMART DIRP_2 638 739 IPR033471 -
Gso20g1913 1137 PANTHER LIN-9 13 1137 IPR010561 GO:0006351|GO:0017053
Gso20g1913 1137 Coils Coil 857 880 - -
Gso20g1913 1137 MobiDBLite consensus disorder prediction 8 52 - -
Gso20g1913 1137 CDD SANT 59 93 IPR001005 -
Gso20g1913 1137 MobiDBLite consensus disorder prediction 38 52 - -
Gso20g1913 1137 Gene3D - 5 111 - -
Gso20g1913 1137 MobiDBLite consensus disorder prediction 242 269 - -
Gso20g1913 1137 MobiDBLite consensus disorder prediction 239 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1913 Gso-Chr20 49765505 49780393 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso20g1913 DIRP 1.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1913 - - gmx:100789533 2228.37