Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1898 ATGGAAGATGATGACGCAGCGATTGAGGTGAGGAACCATGTTTCCCCAGAGCCAGAGGTGGAGGATTCCAGTTGCTGTTGCCCAATTTGCTTGGGACCATTCCTTCAACTTTCCTACCTCGACAAATGTTTTCATAAGTTTTGCTTCAATTGCATTTTACGCTGGACCAAGGTGGTTGCTAGCAAGCACCGTTCTCCACCTTCTTCTGTAAAATGCCCCCTCTGTAAGACCGAAAATTTTTCTATCATATATGTAGTTGATGGGAGTTGTTTTCAACGTCATTATGTAAATCAAGATTTTGAGAATAGTTTTATCTTATCAAGAGCTCACAGATATAGAGTACAATGCTATTACACTGAACAAGGTTTTGTAGATGACATATTCAATATATCACAATATTGGAGATCTCAAAAGTACTATCAGCCAAACTGCTGGCTTCAAAGTTGGTTAAGAAGAGAAATTCAAGCTCTTATCCAGGAGGAGGATGTTGACATCATTGTGCACCATATCCTTGCTGTGGTCAAAGCAGCATTATGGACTAGGAGAGAGCAGAAGTCACACATGAATGCACCTGAAAAGAAACAGGAGGAGTTCAAGATGCCAGTCTCTGAAGCCGCAAGGCCTTTTCTGGCAGCAAGAACGGACAGATTTATATATGAGATTCAACTATTTCTTGCTTCAGGAATGAATATTGAAGCTTATGATGCTGTTTACATACAACGGTTAGGTTGGAGCTCACCTGGGGTAAACACTGAGGTTTCTCAAAGTGAATTAGTTGATCGTGCAACTGTGATTCCATACCTGTACCTATTTGATGGTGACTTTGATGAAAATGAGTAA 840 0.406 MEDDDAAIEVRNHVSPEPEVEDSSCCCPICLGPFLQLSYLDKCFHKFCFNCILRWTKVVASKHRSPPSSVKCPLCKTENFSIIYVVDGSCFQRHYVNQDFENSFILSRAHRYRVQCYYTEQGFVDDIFNISQYWRSQKYYQPNCWLQSWLRREIQALIQEEDVDIIVHHILAVVKAALWTRREQKSHMNAPEKKQEEFKMPVSEAARPFLAARTDRFIYEIQLFLASGMNIEAYDAVYIQRLGWSSPGVNTEVSQSELVDRATVIPYLYLFDGDFDENE* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1898 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 94 IPR013083 -
Gso20g1898 279 Pfam Zinc finger, C3HC4 type (RING finger) 27 75 IPR018957 GO:0046872
Gso20g1898 279 ProSiteProfiles Zinc finger RING-type profile. 27 76 IPR001841 -
Gso20g1898 279 SMART ring_2 27 75 IPR001841 -
Gso20g1898 279 ProSitePatterns Zinc finger RING-type signature. 43 52 IPR017907 -
Gso20g1898 279 SUPERFAMILY RING/U-box 14 84 - -
Gso20g1898 279 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1898 Gso-Chr20 49673050 49675367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1898 17 89 C3H Transcription Factor Family AT5G19430 36.364 2.64e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1898 - - gmx:100306017 586.645