Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1895 ATGGATAATCAAGGGCATGGACATGGGCAGAATCCATCTATGGGGATTGTTGGAAATGGACCTCAACTTCCTTATGGTTCTAATCCATACCAGGCAAGCCATATAACAGGTTCACCTGGAATGGTTGTTGCATCACCTGGAACCATTCAATCCACAGGTCAACCAGCCGCAACTCAGCTAGGACAACATCAACTTGCTTATCAGCAACAACAGCAGCAGCTGCAGCAGCGGCTCCAAGCCTTTTGGGCAAACCAATATCAAGAAATTAAGAAGGTGACCGATTTCAAGAACCACAGCCTCCCCTTGGCGAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTCAGAATGATATCAGCCGAGGCGCCGGTCATATTTGCGAGGGCATGTGAAATGTTCATACTGGAGTTAACCTTGCGGTCTTGGAATCACACTGAAGAGAACAAAAGGAGAACACTTCAAAAGAATGATATTGCAGCAGCCATCACAAGAACTGATATCTTTGATTTCTTGGTTGACATTGTGCCTAGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATGCCAAGAGGAACTGTGCCTGTTACAGGGCCTGCTGAGGCACTTCCATATTGCTATATTCCACCTCAACATGCACAGCAAGTTGGAGCTGCTGGTGTCATGATGGGTAATAAGCCTGTGATGGACCCGTATGCTCAACAGTCTCATCCCTACAACATGGCACCACAAATGTGGCCACAACTACTACCACCACCACCACCAGAGCAACAACAGTCATCTCCAGATCAGTAG 792 0.4697 MDNQGHGHGQNPSMGIVGNGPQLPYGSNPYQASHITGSPGMVVASPGTIQSTGQPAATQLGQHQLAYQQQQQQLQQRLQAFWANQYQEIKKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASMPRGTVPVTGPAEALPYCYIPPQHAQQVGAAGVMMGNKPVMDPYAQQSHPYNMAPQMWPQLLPPPPPEQQQSSPDQ* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1895 263 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 263 - -
Gso20g1895 263 MobiDBLite consensus disorder prediction 240 263 - -
Gso20g1895 263 Gene3D Histone, subunit A 61 177 IPR009072 GO:0046982
Gso20g1895 263 MobiDBLite consensus disorder prediction 1 31 - -
Gso20g1895 263 SUPERFAMILY Histone-fold 67 171 IPR009072 GO:0046982
Gso20g1895 263 MobiDBLite consensus disorder prediction 244 263 - -
Gso20g1895 263 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 263 - -
Gso20g1895 263 Pfam Core histone H2A/H2B/H3/H4 68 162 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1895 Gso-Chr20 49656533 49657455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1895 1 224 CCAAT-HAP5 Transcription Factor Family AT1G08970 65.179 4.51e-83 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso20g1895 CBFD_NFYB_HMF 5.9e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1895 K08066 - gmx:100785287 460.685