Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1891 ATGCACCCCCACTCTCTCACTTGGTCCACTAGAGTGACCCAGATGAATTACTCAAACCGAAATGGAGGAATTTGTATCCTTCTCTTTTTCTTCCTCCTTCCTTTTGCTGCGGCACAACATGGCAACCAAAACGAATCGTATTACAACAAGTTCAGCCCTTCCATGGCGATCATAATCGTGATCCTCATCGCCGCGCTGTTTCTAATGGGCTTCTTCTCCATCTACATCCGCCACTGCTCCGGCTCCCCCTCCGCCAGCATCCGCAACCTCCCTGCCGCCTCCGGGAGGTCGCGGCGCGGCTCGCGCGGGCTCGACCAGGCGGTGATCGACACGTTCCCGACGCTGGAGTACTCGACGGTGAATATCCACAAGCTGGGAAAGGGGACGCTGGAGTGTGCGGTGTGCTTGAACGAGTTTGAGGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTGTTCCACCCCGAGTGCATCGACGAGTGGCTAGCTTCCCACACCACTTGCCCCGTGTGCCGCGCCAACCTCGTCCCCCAGCCCGGCGACTCCGTCCACGGAATCCCCATCCTCGACGCTCCTCAAGGCGTCGAGGCCCAACAGCAACAAGACCCCAAGGCCGAACCTCAAGTGCTGACACTAAACCAGACGCTGAACCGGAACCGCACCAGAGGCTCCCAGTCGGGCCGGCCCCGGCGGTTCCCGCGCTCACACTCGACCGGCCATTCTTTGGTCCAACCTGGCGAGGATACTGAACGGTTCACTCTGAGGCTTCCCCAGGAAGTTAGAAAGCAGATACTGCATCGCGCGAGAAGCTTGGTTATCTTACCGAGAGAAGGTAGTTCGCGGCGGGGATATCGAACCGGTGAGGGAAGTAGCAGAGGGAGGTCCTCGAGGCGGTTGGACCGGTGGGTTTTCAGCATGGCGCCGGCTTTCTTTGTGAGAGCGTCGTCGATTAGGTCGCCCAGGGTGGCCAATAACGGCGCCGACGGAACTTCCGCTACTGCGCCTTTGCCGCCTGCTGTGGAGTCTGTTTGA 1038 0.5944 MHPHSLTWSTRVTQMNYSNRNGGICILLFFFLLPFAAAQHGNQNESYYNKFSPSMAIIIVILIAALFLMGFFSIYIRHCSGSPSASIRNLPAASGRSRRGSRGLDQAVIDTFPTLEYSTVNIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGDSVHGIPILDAPQGVEAQQQQDPKAEPQVLTLNQTLNRNRTRGSQSGRPRRFPRSHSTGHSLVQPGEDTERFTLRLPQEVRKQILHRARSLVILPREGSSRRGYRTGEGSSRGRSSRRLDRWVFSMAPAFFVRASSIRSPRVANNGADGTSATAPLPPAVESV* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1891 345 Pfam Ring finger domain 131 174 IPR001841 -
Gso20g1891 345 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Gso20g1891 345 SUPERFAMILY RING/U-box 127 181 - -
Gso20g1891 345 CDD RING-H2_EL5_like 131 174 - -
Gso20g1891 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 179 IPR013083 -
Gso20g1891 345 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 25 270 - -
Gso20g1891 345 MobiDBLite consensus disorder prediction 325 345 - -
Gso20g1891 345 PANTHER RING FINGER DOMAIN-CONTAINING 25 270 - -
Gso20g1891 345 SMART ring_2 132 173 IPR001841 -
Gso20g1891 345 MobiDBLite consensus disorder prediction 217 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1891 Gso-Chr20 49622842 49624269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1891 23 335 Rapid Response to Elicitors AT3G05200 48.949 6.00e-94 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1891 K10664 - gmx:100783688 594.349