Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1890 ATGGCACTAGAGGCAGTGGTATTTCCACAATCACAAGACCCTTTTGGTGGTAGTGGTTACGGATCAGTGAATAATAAGGACTTCTACAACTGCACCTTGTTGGCTGCTACTTCACCCAACTCATGGGGGGACTATGAGCAACACATCAACATCAACAAAGAAGAAGAACAAGGTGGTGCTTCTATCTCCACTTTTCAACCAGAGAGTAATTACCCTTATGGAAATTGGACCAGCTCCTCCTCATCTATGTTACCCCACTTCAACAATGAACTTCAAGAAACCACTACTACTGACCCCAGTAACACCTTAGATAGCTTAAACACTCGTCCCAAGAGGCGCAGAGCCAAAAGCAGAAAGAACAAAGAAGAAATTGAGAACCAAAGAATGACTCACATTGCTGTGGAACGCAATAGAAGAAAGCAGATGAATGAGTATCTTTCTGTTCTTCGCTCTCTTATGCCAGACTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTCAAAGAGCTTGAGCAGAGGATGCATTTTCTTGGTGCTCAGAAAGAAGGAGAGGGGAAATCTGAGGCTGGTGGTGCAACAAACATGCCCTTTTCTGAGTTCTTCACCTTTCCTCAGTATTCAACTAGTGGTGGTGGTGGTTGCTCTGATAATTCTGCAGCCGTAGGTGAAGACGTGGGTGAGGTTAAGTGTGGCATTGCTGACATAGAAGTGACCATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAGCGCCCCAAGCAGCTCTTGAAGTTGGTTTCTGGTTTGCATACCATGCGCCTCACAATCTTGCACCTAAATGTTACTACCACCGGTGAAGTTGTTCTCTACTCTCTTAGTGTTAAGGTAGAAGATGATTGCAAGTTGGGATCAGTTGATGATATAGCTGCAGCTGTGTACCAGATGCTAGATAAAATTCAGCAAGAGGCAATGTTGAATTAA 987 0.4367 MALEAVVFPQSQDPFGGSGYGSVNNKDFYNCTLLAATSPNSWGDYEQHININKEEEQGGASISTFQPESNYPYGNWTSSSSSMLPHFNNELQETTTTDPSNTLDSLNTRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRMHFLGAQKEGEGKSEAGGATNMPFSEFFTFPQYSTSGGGGCSDNSAAVGEDVGEVKCGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTGEVVLYSLSVKVEDDCKLGSVDDIAAAVYQMLDKIQQEAMLN* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1890 328 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 328 - -
Gso20g1890 328 SMART finulus 132 183 IPR011598 GO:0046983
Gso20g1890 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 177 IPR011598 GO:0046983
Gso20g1890 328 PANTHER MAX DIMERIZATION, MAD 1 328 - -
Gso20g1890 328 Gene3D - 108 191 IPR036638 GO:0046983
Gso20g1890 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 189 IPR036638 GO:0046983
Gso20g1890 328 MobiDBLite consensus disorder prediction 92 106 - -
Gso20g1890 328 MobiDBLite consensus disorder prediction 92 122 - -
Gso20g1890 328 CDD bHLH_AtFAMA_like 129 201 - -
Gso20g1890 328 Pfam Helix-loop-helix DNA-binding domain 127 178 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1890 Gso-Chr20 49600683 49602489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1890 1 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 44.880 1.21e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso20g1890 HLH 8.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1890 - - gmx:100779213 646.736