Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1885 ATGGCCAATCACAAACTAGATTGTTGTTTGTGTGACCAGAAGAAAAGCCAAGCTAATAAACCGAAGAAGCTTACAATTGCAGAAGCTTTAGATCTTCAATCTGATTTGCTGCACCCCGATACCAATGCCAATACGAGGCCCAAAAGAGCTACCAAGAGACAAGCCTCTCTATTTTCTTGTTCATCTTCTGCCCATGACTTGAGGCATTTGGAATTGGAGAAAGAGAAAGAAAATATAGCATCACCAAGAGGAGTCTTGGAAGCCTGCATGAAAGACTTTGACTCTCACGACCAATCACATGAATCGAAAGCCACTTGTTCAACCACGAGGGCACGCTCTCACTGGTCCAAATTCTTCAAAATTTGGAGGAAAAAATCTTTTAAGCGCCTAGGCTCCCTCCCTCCTCTTATTAGTGTGCCAAAGATACCGAAGTGGAAAAGCAAAAGCAGCAGAGAAAACCAAGTTCTAAGTAAGCTATACAACTTCAGGTCTTCTTGGGTCACTTTCAGCCTCTCTGAACTCAGAAATGCAACCAACAATTTTAGTGATGAAAATATAATTGGAAGAGGTGGCTTTGCTGAGGTTTACAAAGGGTGTCTCCAAGATGGACAATTAATAGCTGTGAAGAAATTGAGTAAAGGGACCACAGATGAAAAAACCGCAGGCTTTCTATGTGAGCTAGGTGTAATTGCTCATGTTGACCATCCTAATACTGCAAAGCTAGTTGGATGTTGTGTAGAAGGGGAAATGCAACTTGTCTTTGAACTCTCTACACTCGGAAGTTTAGGATCTCTTCTTCATGGTTCAGATAAAAAGAAATTAGATTGGAGTAAAAGGTATAAAATTGCTCTGGGAATAGCTGATGGTCTCCTCTATCTGCATGAGTGTTGTCACAGGCGAATCATTCATAGAGATATCAAGGCAGAGAATATTCTGCTCACGGAGAATTTTGAGCCACAGATATGTGATTTTGGACTTGCAAAGTGGTTACCAGAACAATGGACTCACCATAGTGTATCAAAATTTGAAGGCACATTTGGCTATTTTGCTCCTGAATATTTCATGCATGGAATAGTAGATGAGAAAACTGATGTTTTTTCATTTGGGGTCCTACTTTTGGAGATCATAACTGGGCGTCCAGCGGTGGATCATATGCAGCAGAGTGTTGTGATATGGGCAAAACCATTGCTTGACGCTAATCATATCAAGGACCTTGTTGATCCTTCTCTTGGCGACGATTATAAACGAGAACAGATGGGTTGTGTTGTTTTAACTGCATCAATGTGCATTGAACACTCTCCTATCTTACGCCCCCGCATGAGTCAGGTTGTAACACTGCTAAGAGGTGAAGACCATGTTCTGAAAGCTACAAAATCAAGCCGAAGGAGGCCTCTACAAAGAGCATACTCAGAAGAGCTACTAGACGCGCAAGAATACAACTCAACAAAACATCTAAGAGATCTCAAGCGATTTGAGCAGATTGCATTGGGTTAA 1494 0.4157 MANHKLDCCLCDQKKSQANKPKKLTIAEALDLQSDLLHPDTNANTRPKRATKRQASLFSCSSSAHDLRHLELEKEKENIASPRGVLEACMKDFDSHDQSHESKATCSTTRARSHWSKFFKIWRKKSFKRLGSLPPLISVPKIPKWKSKSSRENQVLSKLYNFRSSWVTFSLSELRNATNNFSDENIIGRGGFAEVYKGCLQDGQLIAVKKLSKGTTDEKTAGFLCELGVIAHVDHPNTAKLVGCCVEGEMQLVFELSTLGSLGSLLHGSDKKKLDWSKRYKIALGIADGLLYLHECCHRRIIHRDIKAENILLTENFEPQICDFGLAKWLPEQWTHHSVSKFEGTFGYFAPEYFMHGIVDEKTDVFSFGVLLLEIITGRPAVDHMQQSVVIWAKPLLDANHIKDLVDPSLGDDYKREQMGCVVLTASMCIEHSPILRPRMSQVVTLLRGEDHVLKATKSSRRRPLQRAYSEELLDAQEYNSTKHLRDLKRFEQIALG* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1885 497 SMART serkin_6 181 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1885 497 ProSiteProfiles Protein kinase domain profile. 181 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1885 497 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 57 493 - -
Gso20g1885 497 Gene3D Phosphorylase Kinase; domain 1 142 255 - -
Gso20g1885 497 Gene3D Transferase(Phosphotransferase) domain 1 258 470 - -
Gso20g1885 497 PANTHER OS08G0249100 PROTEIN 57 493 - -
Gso20g1885 497 Pfam Protein tyrosine and serine/threonine kinase 185 392 IPR001245 GO:0004672|GO:0006468
Gso20g1885 497 SUPERFAMILY Protein kinase-like (PK-like) 160 447 IPR011009 -
Gso20g1885 497 ProSitePatterns Protein kinases ATP-binding region signature. 187 210 IPR017441 GO:0005524
Gso20g1885 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1885 Gso-Chr20 49557088 49560759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1885 168 453 Receptor kinase-like Gene Family AT1G53420 45.763 4.60e-74 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso20g1885 PK_Tyr_Ser-Thr 6.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1885 - - gmx:100781529 996.497