Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1879 ATGGAATGCAACAAGGACGAGGCTTTGAGGGCTAGGCAAATTGCTGAAGCCAGAATGCAAAGAGGTGAATTTGCGGAGGCACTCAGGTTTGCTACCAAGGCCAAAAGACTGTATGCCGACGTTGAAAACATTGCCCAGATTATTACGGTTTGTGAGGTTCACATCGCTGCTCAGAAAAAACTCTCTGGCTGTGACATGGACTGGTATGCAATTCTTCAGATTGAAAGGCTGGCTGATGAAGCAACCGTAAAGAAACAGTACAGGAGGCTTGCACTGCTACTTCATCCTGATAAGAACAAGTTTGCTGGTGCAGAAGCTGCTTTCAAGTTGATTGGGCAAGCCAATGGGCTCTTGTGTGACCAAGCAAAACGTTCTTTGTTTGACAAGAAGTTTGGAGCCTCCGTGAAAGGTGCTGCGCCTAAGCCTAAGACCTCGCACAATTATTCAAATGGGAATGTGTTTGCCGCTAAACATAATGCAAATGCAACAAAGACTCAGAAGAGTTCTGATTCGCACCATTTCTCAAATGGGAATGTGTTTGCTGCAAAATGTGGCGCAAACGCAACAAATTATCAGAATTCTTATCCGAACTCCACTGGTTTCAGCAACCAAGGTGCACAGATGACATTCTGGACATCTTGCCAACATTGTGATGCTAAGTACCAGTACCCGATCCGATTTGTAAATGCAAACTTACTGTGTCAACAGTGTAAGAAGCCATTTAAAGCTCTTGCTAATGGTTTTGGAATCATGGGTGCGGCAACAGTGCTTACTTCAGTAAATATTCCGAAGGAGGCTCCAATGCATGGTCCCCCAAAACCAGCCTCAGAAAATACTGGTCGAAAACCCCTTGGTAGAGAACAAGCTGGTACGTTTGTGCGGTCAAATCCTACATCTATGAAAAAATGTGCTGCTGGAGTCGGTAGACGTTGTGGAGGTGAAAAGAGTAAAGATGGCAACATTCCTGCATCCAGTGATATGGAGCCACAGACCTCTCAAAATTTTGGAAGTAAAAGAGTAAGGCAGTCAGCACCAGATTCAGGAGAAAGTTTCAAAGCCAGAAATGGTGATGATACCAAAGCTGCCAATATTCGAGAAAATGCTGTTGATTCTTCAAATACAAGGAGATCTTCCAGGAAAAAGCAGCATGTTTCATATATTGAAACCTCTGAAGATGACGATTTTGAGATTCCTTCCAAAAAGCCACGACAAAGTGGACCACTTAATGCTGATGAAGCTGAGGAACAAAACGTGCCTGCAAGTGGTGAGTCGTCTGATAATAATATTCCAGCTACTCCCGGTGCGACTGATCAGAACAAAGAGAAGGTATCCGAGTCAGATATTGGTCTTGGAACGTCAAAGGAGGATAAGCGCTCCCCAAAAAATTCAAAGGTTCCTTCTCGTCCACGGATATTTCATTGTCCTGTTTCTGATACAGATTTCAATGATTTTGAGAAGGATAAGGAGGAGGATTGTTTTGCTGTTAATCAGTTGTGGGCAGTTTATGATAGCACTGATGCGATGCCAAGATTTTATGGTCTTGTCAAGAAAGTGGCCTCCCCTTTCCAGTTGAAGATTACTTGGTTGGAACCTGACCCAGATGACAAAGGTGAAATTGATTGGAATGATGCAGAATTGCCTATTGCTTGCGGTAAGTTTAGACTTGGTGGTTCTCAGCAAACTACAGATCGCACCATGTTCTCTCATCAGGTGCGGTGCATAAAAGAAACCGGCAGAGGTTCTTATCTGGTATGTCCTAATAAGGGAGAAACATGGGCAATTTTCAGAGATTGGGATATCAACTGGAGTTCGAATCCAAAAAATCATCTGAAGTATGACTTCGAATATGTGGAAATCCTATCAGATTTTTCTGAGAATGTTGGCATCGCAGTTGCTTATATGGGCAAAGTGAAAGGATTTGTTAGCCTTTTTCAGAGAACGGAGAAGAATGGAGTAAACATATTTTATATCGAACCTAATGAACTATACAGGTTCTCACATCGAATTCCTTCTTATAAGATGACCGGTTATGAAAGGGAGGGTGTTCCAAGAGGATCATTTGAATTTGATCCAGCGGCCCTGCCGACTCATCTCTTTGAAGTTGGTGATTCTGGTAATGTAAAGATGTGA 2130 0.4296 MECNKDEALRARQIAEARMQRGEFAEALRFATKAKRLYADVENIAQIITVCEVHIAAQKKLSGCDMDWYAILQIERLADEATVKKQYRRLALLLHPDKNKFAGAEAAFKLIGQANGLLCDQAKRSLFDKKFGASVKGAAPKPKTSHNYSNGNVFAAKHNANATKTQKSSDSHHFSNGNVFAAKCGANATNYQNSYPNSTGFSNQGAQMTFWTSCQHCDAKYQYPIRFVNANLLCQQCKKPFKALANGFGIMGAATVLTSVNIPKEAPMHGPPKPASENTGRKPLGREQAGTFVRSNPTSMKKCAAGVGRRCGGEKSKDGNIPASSDMEPQTSQNFGSKRVRQSAPDSGESFKARNGDDTKAANIRENAVDSSNTRRSSRKKQHVSYIETSEDDDFEIPSKKPRQSGPLNADEAEEQNVPASGESSDNNIPATPGATDQNKEKVSESDIGLGTSKEDKRSPKNSKVPSRPRIFHCPVSDTDFNDFEKDKEEDCFAVNQLWAVYDSTDAMPRFYGLVKKVASPFQLKITWLEPDPDDKGEIDWNDAELPIACGKFRLGGSQQTTDRTMFSHQVRCIKETGRGSYLVCPNKGETWAIFRDWDINWSSNPKNHLKYDFEYVEILSDFSENVGIAVAYMGKVKGFVSLFQRTEKNGVNIFYIEPNELYRFSHRIPSYKMTGYEREGVPRGSFEFDPAALPTHLFEVGDSGNVKM* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1879 709 MobiDBLite consensus disorder prediction 418 439 - -
Gso20g1879 709 PANTHER - 1 707 - -
Gso20g1879 709 SUPERFAMILY Chaperone J-domain 64 131 IPR036869 -
Gso20g1879 709 Pfam Domain of unknown function (DUF3444) 476 677 IPR024593 -
Gso20g1879 709 Gene3D DnaJ domain 64 188 IPR036869 -
Gso20g1879 709 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Gso20g1879 709 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 707 - -
Gso20g1879 709 MobiDBLite consensus disorder prediction 264 471 - -
Gso20g1879 709 MobiDBLite consensus disorder prediction 440 463 - -
Gso20g1879 709 CDD DnaJ 67 120 IPR001623 -
Gso20g1879 709 PRINTS DnaJ domain signature 69 87 IPR001623 -
Gso20g1879 709 PRINTS DnaJ domain signature 87 102 IPR001623 -
Gso20g1879 709 PRINTS DnaJ domain signature 103 123 IPR001623 -
Gso20g1879 709 MobiDBLite consensus disorder prediction 323 344 - -
Gso20g1879 709 MobiDBLite consensus disorder prediction 372 400 - -
Gso20g1879 709 Pfam DnaJ domain 67 128 IPR001623 -
Gso20g1879 709 SMART dnaj_3 66 123 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1879 Gso-Chr20 49514340 49517203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1879 47 244 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 27.094 2.24e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1879 - - gmx:102662460 1437.94