Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1875 ATGGTTTTTGAAATCAGTACTGTTGTTTCAAAATTGCAAACGTTATCCACCTCAGACCATGCCTCCGTGGTCTCCATGAACTTATTTGTGGCACTTCTTTGTGGTTGTATTGTCCTTGGCCATCTTCTTGAGGAGAATCGGTGGATGAACGAGTCTATCACTGCTCTTTTGATTGGTGTTTGCACTGGCATAGTCATTTTGCTGTTTAGTGGTGGCAAAAGCTCGCATATTCTTGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTGCCGCCTATAATATTTAATGCCGGGTTTCAGGTGAAAAAGAAGCAGTTTTTTGTTAACTTCATGACCATCATGTTGTTTGGTGCTATTGGCACATTAATATCTTGTACCATCATAACTTTGGGTGCCACACAAATTTTTAAGAGGTTGGATGTTGGTCCACTGGAATTAGGGGATTTCCTAGCAATTGGTGCAATATTTGCTGCAACGGATTCTGTTTGCACATTGCAGGTGCTAAATCAGGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAAGCTTTGACCTCAACCAAATCGACCCTTCAATTGCTGGGCACTTTTTGGGAAATTTCTTGTATCTATTTATTGCAAGCACAATGCTTGGAGTGTTGACAGGTCTACTTAGTGCTTACATTATTAAAAAGCTGTACATTGGCAGGCACTCTACAGATCGCGAGGTTGCTCTTATGATGTTAATGGCATACCTCTCCTACATGCTTGCTGAATTGTCCTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGGATTGTCATGTCTCATTATACCTGGCATAATGTGACTGAGAGTTCAAGAATCACTACCAAGCATTCTTTTGCAACCTTGTCTTTTGTTGCTGAGATCTTTATCTTCCTTTATGTTGGTATGGATGCCTTGGACATTGAAAAATGGAAATTTGTCAGTGATAGCCCTGGAACATCTGTAGCAACTAGTTCAGTATTGTTGGGTCTAATTCTTCTTGGAAGAGCAGCTTTTGTTTTCCCCTTATCCTTCCTATCCAACTTGGCTAAAAAATCACCAAATGAGAAAATCAGCTTCAGACAGCAAGTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATCGCACTTGCATATAATCAGTTCACCATGTCGGGGCACACTTCACTAAGAAGCAATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGGTGTTTGGTCTGTTGACTAAGCCACTAATAAGGCTTTTACTGCCCCATACTCCACATCATAAAGAATCAAGCATCACGATAACCACAGATCCATCTACTCCAAGTCCAAAATCAGTCACTGTCCCACTTCTTGGGAGTGCCCAAGAATCTGAAGTCGATATTGATGGCCATGATATTCATCGTCCAAGCAGCATCCGTGCTTTACTTTCCACTCCAACACACACTGTTCATCGCTTGTGGCGTAAGTTTGATGATGCATTCATGCGTCCTGTTTTTGGTGGCAGGGGTTTTGTTCCTATAGAACCTGGCTCACCAACTGAACGTAATGGCCATCAATGGCGTTGA 1641 0.418 MVFEISTVVSKLQTLSTSDHASVVSMNLFVALLCGCIVLGHLLEENRWMNESITALLIGVCTGIVILLFSGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLISCTIITLGATQIFKRLDVGPLELGDFLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLNQIDPSIAGHFLGNFLYLFIASTMLGVLTGLLSAYIIKKLYIGRHSTDREVALMMLMAYLSYMLAELSYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHSFATLSFVAEIFIFLYVGMDALDIEKWKFVSDSPGTSVATSSVLLGLILLGRAAFVFPLSFLSNLAKKSPNEKISFRQQVIIWWAGLMRGAVSIALAYNQFTMSGHTSLRSNAIMITSTITVVLFSTVVFGLLTKPLIRLLLPHTPHHKESSITITTDPSTPSPKSVTVPLLGSAQESEVDIDGHDIHRPSSIRALLSTPTHTVHRLWRKFDDAFMRPVFGGRGFVPIEPGSPTERNGHQWR* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1875 546 Pfam Sodium/hydrogen exchanger family 28 442 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Gso20g1875 546 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 27 453 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Gso20g1875 546 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Gso20g1875 546 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Gso20g1875 546 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Gso20g1875 546 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Gso20g1875 546 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 545 - -
Gso20g1875 546 PANTHER SODIUM/HYDROGEN EXCHANGER 7 545 IPR018422 GO:0006812|GO:0015299|GO:0016021
Gso20g1875 546 Gene3D - 146 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1875 Gso-Chr20 49472104 49478115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1875 6 544 Antiporters AT3G05030 77.264 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1875 - - gmx:732573 1031.55