Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1873 ATGAGTGAGAGAGTGAAGAAAGAAAAACAAACGGGGGACAAAAGGGAGAGGATGAAGAACATCTTCAAGAAGCTTCACATAGGTAGCAGCCACGATCCTCATCGATCCAATGAGCCTTCGCCTCCTGTGCCGTCGCCTTCGTGCGCCACCGATCAGTCTCAGAGCTCCGCCGCCACTCCGCCGAGTCCTTCTTCGGCGTCGCCGTCGTCGTCGCCGTCCACGCTGGTGGTAACTCCCAGCTGCGGCGGCGGCGGCGCGAGTCCGGTGGTGAATCGGCAGGACTTTTTCTCGTCGGAGGAAGAGTTTCAGGTGCAGCTAGCCCTAGCTATCAGCGCTTCCAATTCGGAGTTCCGCGAGGATCCTGAGAAGGATCAGATCCACGCGGCGACGCTGTTGAGCTTGGGAGGCCATCGAATCGATTCGACGAGGAACAAGGACGATGTGGCGGAGGCTCTGTCGAGGCAGTACTGGGAATATAATGTGCTTGACTATGAGGAGAAAGTGGTAGATGGTTTTTATGATGTATATGGGCCCTATAATGATTCAGTAATGCAAGGAAAGATGCCATCTCGAACAGATCTTGAAGCAAACCCTGGAGGTTCTGAGTTGGTCATTGTTAATCAAACAATTGATCCTGCTCTGGAAGAACTGATACAAATTGCACAATGTATTGCATTAGACTGCCCTGTCTCTAGTTTGGTACAAAGGCTTGCTGAACTTGTTACAAGTCATATGGGTGGTCCTGTAAAGGATGCTGGTATCATGTTAGCAAGATGGACCGAAACAAGAGCAGAGTTAAGGACATCTCTTCACACAATTGTATTGCCTCTTGGGTCCTTAAATATTGGGCTCTCTAGGCATCGTGCTTTGCTATTCAAGGTATTAGCTGACAACATTAATATGCCTTGTAGACTGTTAAAAGGTAGTCATTACACTGGTGTGGAGGATGATGCTGTCAACATTATAAAGTTGGAGGGTGAAAGGGAGTTTTTGGTTGATCTCATGGCTGCTCCAGGGACACTTATCCCAGCTGATATTTTAAGCACCAAGGATAGTGCCTTTAAGTCTTACAATCCCAAGATTTTGCCAAGTTTACCCTCCACTAAGGATAATGAATTTTCTTACTCAAGACCTATCCAACCATTTCATGGTGAAGGTAGTAGTCAAAATTCTGTGATAAAAGATTATTCACTGCCCTGGAATGGAAAACCATATTTTGAGAAGTCAGAGCCTTCAAACTTAGGTTTGAGTAGAGAGAGTGGCACTGGTCCTTCTAAAATTCCTAATAAAGGGACTCCTAACCAACTAGACAATTTGCCAGCCTTGTCTGGTGCTTCTCTGTACAAAGGGACACTTGGAATGAATACAGTTGGTGATGGGACAAGATTGAATGTCAATGTTGTACCATATACTAATATCAGCCCCAATGACTCTCGGAACCTTTTTGCAGATCTTAACCCATTCCAAATAAAAGGAATGGGGAAAGCCCCTGTGCATAACAAACCTGTGGAAAATAAACCTCCTGAGCTTAAAAGTACTAAAAACAATACTGTTTCTGGTAGACCCCCAGTGCCACTGATGTGGAAGAATCGTCCTGCTTACAATGAAGACCCCAGGAAAACTAATCATAACCCTAATGATTACAACCCTCCCTTATTTGTTTCCAATGGTTCTTCTACGTCTGAAAATATTGACCTTAGTAGTTCCAAACCATTGTATAATTCAAATATAAATAATGATGTAAATGCTCAAACTTTGGCGCAAGTTACTGGTTCAGTTTCACCACCTACTGTACCTAAACTGAACCAGATTGAGGATCTCAATGCAGATTTTAACCAGGGGGGTTTGGAAGATTCTCAATATGTCATGGTAGAGGCAGTTAGAGAACCTGAAAATGTTGAAATCAGACATCATGATCAGAGGAAGTGTACATATGACAGATTCATGGGAAGCAATTTGAAATTAAAAGATCCAGAGAGTCCTAGCTCATCAATTGATTCCATCACAAACAGGATTGATCCAATATTGGATGATGTAGATGTTGGTGAATGTGAGATTCCATGGGAGGATCTGGTTCTTGGTGAAAGAATTGGTATAGGTTCATATGGAGAGGTATACCATGCCGACTGGAATGGCACAGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCTGCATTGTCAGAATTCAAAAGAGAAGTACGGATAATGCGTAGGTTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTCTCAATCATTTCAGAGTATCTACCAAGAGGAAGCTTGTACCGAATTCTTCATCGCTCTAATTATCAGATTGATGAGAAACGAAGAATAAAAATGGCTCTGGATGTGGCTAGGGGCATGAATTGCTTACACACCAGCACACCTACAATTGTTCATCGAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGGTATGTGATTTTGGGTTGTCACGGTTGAAGCACAACACATTTTTGTCATCCAAGTCAACTGCTGGAACGCCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAAATGCGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTTGCCACTCTAAGGTTGCCGTGGAGTGAAATGAATACTATGCAAGTTGTTGGTGCCGTTGGTTTCCAAAACCGTAGACTTGATATTCCGAAGGAAGTCGATCCTATAGTTGCAAGAATAATCTGGGAGTGTTGGCAACAGGATCCAAATTTGCGGCCCTCGTTTGCACAACTCACAGTGGCTCTAAAGCCTCTGCAGCGTCTGGTTATCCCATCTCATCATGACCAGGTAGCTCCACCTATGCCGCAGGAGATTTCTGTAAATTCAACCCCCTGA 2919 0.4395 MSERVKKEKQTGDKRERMKNIFKKLHIGSSHDPHRSNEPSPPVPSPSCATDQSQSSAATPPSPSSASPSSSPSTLVVTPSCGGGGASPVVNRQDFFSSEEEFQVQLALAISASNSEFREDPEKDQIHAATLLSLGGHRIDSTRNKDDVAEALSRQYWEYNVLDYEEKVVDGFYDVYGPYNDSVMQGKMPSRTDLEANPGGSELVIVNQTIDPALEELIQIAQCIALDCPVSSLVQRLAELVTSHMGGPVKDAGIMLARWTETRAELRTSLHTIVLPLGSLNIGLSRHRALLFKVLADNINMPCRLLKGSHYTGVEDDAVNIIKLEGEREFLVDLMAAPGTLIPADILSTKDSAFKSYNPKILPSLPSTKDNEFSYSRPIQPFHGEGSSQNSVIKDYSLPWNGKPYFEKSEPSNLGLSRESGTGPSKIPNKGTPNQLDNLPALSGASLYKGTLGMNTVGDGTRLNVNVVPYTNISPNDSRNLFADLNPFQIKGMGKAPVHNKPVENKPPELKSTKNNTVSGRPPVPLMWKNRPAYNEDPRKTNHNPNDYNPPLFVSNGSSTSENIDLSSSKPLYNSNINNDVNAQTLAQVTGSVSPPTVPKLNQIEDLNADFNQGGLEDSQYVMVEAVREPENVEIRHHDQRKCTYDRFMGSNLKLKDPESPSSSIDSITNRIDPILDDVDVGECEIPWEDLVLGERIGIGSYGEVYHADWNGTEVAVKKFLDQDFSGAALSEFKREVRIMRRLRHPNIVLFMGAVTRPPNLSIISEYLPRGSLYRILHRSNYQIDEKRRIKMALDVARGMNCLHTSTPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWSEMNTMQVVGAVGFQNRRLDIPKEVDPIVARIIWECWQQDPNLRPSFAQLTVALKPLQRLVIPSHHDQVAPPMPQEISVNSTP* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1873 972 ProSiteProfiles Protein kinase domain profile. 691 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1873 972 CDD STKc_MAP3K-like 697 940 - -
Gso20g1873 972 PANTHER SERINE-THREONINE PROTEIN KINASE 86 965 - -
Gso20g1873 972 PRINTS Tyrosine kinase catalytic domain signature 765 778 IPR001245 GO:0004672|GO:0006468
Gso20g1873 972 PRINTS Tyrosine kinase catalytic domain signature 804 822 IPR001245 GO:0004672|GO:0006468
Gso20g1873 972 PRINTS Tyrosine kinase catalytic domain signature 851 861 IPR001245 GO:0004672|GO:0006468
Gso20g1873 972 PRINTS Tyrosine kinase catalytic domain signature 870 892 IPR001245 GO:0004672|GO:0006468
Gso20g1873 972 PRINTS Tyrosine kinase catalytic domain signature 914 936 IPR001245 GO:0004672|GO:0006468
Gso20g1873 972 Pfam Ethylene-responsive protein kinase Le-CTR1 149 342 - -
Gso20g1873 972 MobiDBLite consensus disorder prediction 413 438 - -
Gso20g1873 972 MobiDBLite consensus disorder prediction 47 80 - -
Gso20g1873 972 ProSitePatterns Serine/Threonine protein kinases active-site signature. 810 822 IPR008271 GO:0004672|GO:0006468
Gso20g1873 972 Gene3D Phosphorylase Kinase; domain 1 684 768 - -
Gso20g1873 972 MobiDBLite consensus disorder prediction 495 548 - -
Gso20g1873 972 Gene3D Transferase(Phosphotransferase) domain 1 770 952 - -
Gso20g1873 972 SUPERFAMILY Protein kinase-like (PK-like) 681 964 IPR011009 -
Gso20g1873 972 MobiDBLite consensus disorder prediction 1 33 - -
Gso20g1873 972 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 86 965 - -
Gso20g1873 972 Pfam Protein tyrosine and serine/threonine kinase 692 941 IPR001245 GO:0004672|GO:0006468
Gso20g1873 972 MobiDBLite consensus disorder prediction 1 81 - -
Gso20g1873 972 SMART serkin_6 691 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1873 972 ProSitePatterns Protein kinases ATP-binding region signature. 697 719 IPR017441 GO:0005524
Gso20g1873 972 MobiDBLite consensus disorder prediction 409 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1873 Gso-Chr20 49433279 49441466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1873 18 927 MAP Kinase Kinase Kinase AT1G08720 55.864 0.0 918
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gso20g1873 PK_Tyr_Ser-Thr 1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1873 - - gmx:100818780 1905.95