Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1862 ATGAATGGGGTCACACACCTTGAACCAGATGAGTCTGAGTTTGTTGAAGTTGATCCAACTGGAAGATATGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCAAAGACAGTATATAGAGCATTCGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGTTGTATGATTTCCTGCAAAGCCCTGAAGATCTTGAAAGGCTTTACTGTGAAATTCATCTCCTGAAAACATTGAAGCACAGAAACATTATGAAGTTCTACACTTCTTGGGTCGATACTGCTAATAGGAACATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGGCAGTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCTTGAGCGGACTTCTCTATCTTCACAGTCACGACCCGCCTGTGATCCATAGAGATCTAAAATGTGATAATATTTTTGTCAATGGAAACCAAGGGGAAGTGAAGATTGGGGATCTTGGTTTGGCAGCAATTCTCCGGAAATCTCATGCTGCTCATTGTGTAGGGACGCCCGAGTTCATGGCCCCAGAAGTATATGAAGAGGCATATAATGAGTTAGTTGACATATATTCCTTTGGGATGTGCATATTAGAGATGGTCACATTTGAATATCCTTATAGTGAATGTACTCATCCGGCTCAAATCTACAAGAAAGTTATTTCTGGGAAAAAGCCAGATGCTTTGTATAGAGTGAAGGATCCAGAAGTGCGACAATTTGTTGAAAAATGCTTGGTCACAGTGTCTCTAAGGCTTTCTGCAAGAGAGCTTCTAAATGATCCATTTCTTCAAATTGATGATTATGAATATGATTTGAAAACTGTTGAAAATGGAGAACTGGATGAATTTGGTTCTCTCATGAGGCAGCCATTCTTTGATCTTCATCGAAGCTATAGCAACTTCAGTAATGAATACTCAAATGGCTTTGGGTATGAAGGAGACTGGGGTCCTCATCCAGCTGAGATCGAACCTAGTGGAATTGAACTTTTTGAGTACCATGATGATGACGAACCCTCTGAAGATGTCGACATAAGCATCAAGGGCAAGAGGAAAGATGATGGTGGCATCTTTTTGAGACTAAGAATTGCTGATAAAGAAGGTCGCATCCGAAATATTTATTTCCCATTTGACATAGAGCTGGACACGGCAATAAGTGTGGCAACTGAAATGGTTGCAGAGCTGGACATGACTGATCAGGATGTTACCAGAATAGCAGATATGATAGATGGGGAAATTGCGTCCTTGGTACCTGAATGGAGACCAGGACCAGGAATTGATGAGACTCCTCGTTATGCTAATGAAGGTTTCTGTCACAATTGTGTGTCTAATCATACTTCTAGCGGTTCTTTTCTGGATTTTCTTTCAAACAATCCAGGTAACAAGAACTTGCAACTTCTTGAGTGTTGTAGGCATGGATGTGCTTCAATGCATGGGCGGTTTGGGGAGATTACCTTCCAATCTGAAGAGTATGACAATCATGCTAGAGGGGATCTGAACGTATCAAGCCAATTAGACAGCTTGCAGTATCAGGAGTTATGGAATCAGCATGAAAGTCGTGAACTGAGTCCGGTAGAGTCTGATCAAAGCCATTCTGACGAACAATATGAGCAATTAGATAAACCGATTCTGGCTAAAGACAAAGCACAGGATGTTTGGGAAAAAAAGTTTTCCCCCAATGCAGCAAACTCTCTAAGAAATTTATCAGGAAGTCATGATTTCTCTACTATCCGATCGACCTATTGCGACCTTGAGGATGACTATGAGAAAGAGATTCAAAAGGAACTCAGATGGCTCAGAGCCAAGTACCAAATGGAGTTAAGGGATCATAAGGATGGACAGTTTGGGCAATGCTCACATAGTAGTAACAGTGAGCACAGAACAGAAAATGGCTTTTTGTCACCTTCACTGACAGAAACATTAAAAGGAGGCAACAATGGGACTCGGTTGAAACCCATTACTACTAAGTGGAATTGTGATTCCAGTAGCCACCCTCATGTCCATGAAAGCAGCCCCAATTCGGACACCCAAAGGGCCCAAAATTGTGAGGCGATTGAATCCCCTGGAGAAGGTATGGTTACTGCAAAGAGTTTTTATACAGGCTCATTGCTGCCACACTCTTTGCACAGGACAGTTTCTCTCCCAGTTGATGCTGTTGATATATAA 2217 0.4181 MNGVTHLEPDESEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILSGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYRVKDPEVRQFVEKCLVTVSLRLSARELLNDPFLQIDDYEYDLKTVENGELDEFGSLMRQPFFDLHRSYSNFSNEYSNGFGYEGDWGPHPAEIEPSGIELFEYHDDDEPSEDVDISIKGKRKDDGGIFLRLRIADKEGRIRNIYFPFDIELDTAISVATEMVAELDMTDQDVTRIADMIDGEIASLVPEWRPGPGIDETPRYANEGFCHNCVSNHTSSGSFLDFLSNNPGNKNLQLLECCRHGCASMHGRFGEITFQSEEYDNHARGDLNVSSQLDSLQYQELWNQHESRELSPVESDQSHSDEQYEQLDKPILAKDKAQDVWEKKFSPNAANSLRNLSGSHDFSTIRSTYCDLEDDYEKEIQKELRWLRAKYQMELRDHKDGQFGQCSHSSNSEHRTENGFLSPSLTETLKGGNNGTRLKPITTKWNCDSSSHPHVHESSPNSDTQRAQNCEAIESPGEGMVTAKSFYTGSLLPHSLHRTVSLPVDAVDI* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1862 738 MobiDBLite consensus disorder prediction 633 696 - -
Gso20g1862 738 CDD STKc_WNK 22 281 - -
Gso20g1862 738 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Gso20g1862 738 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1862 738 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Gso20g1862 738 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 727 - -
Gso20g1862 738 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Gso20g1862 738 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 375 428 IPR024678 GO:0004674|GO:0005524
Gso20g1862 738 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1862 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Gso20g1862 738 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1862 738 MobiDBLite consensus disorder prediction 630 696 - -
Gso20g1862 738 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1862 Gso-Chr20 49322667 49325423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1862 127 632 MAP Kinase Kinase Kinase AT3G04910 59.633 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gso20g1862 Pkinase 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1862 K08867 - gmx:100272198 1520.37