Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso20g1857 | ATGACAATTACTTTTGGAACAATCATGGCTCCTCATCCAAGAGTCATTAAGGCTTATAATGCTATGAGATCCTTAGGAATTTCTGATGAAGAGGTGAAACCGGTGTTGAAAAATTTGTTACAATTGTATGATAGAAACTGGGAACTTATTGAAGAAGACAATTATCGTACTCTTATAGATGCATACTTTGAGTTAAAGGAAGCTAAGCAAACAGAAGGTAAGAGAAAGGCTCCAATCAGTTATCTTAATGGGAGAAAGCCAAAACAGGAACTGCACTTGGTAGATGGAGATGACCAGGTTTCATCAACTGACAACTCCAGTCAAGGGTTGTCTGTAGAAGACTCGGAAATAACTCCCAACGCATTTAAACAGAAAATCATTAAATCTTCTCAAACCTCCATTGTACATATGAAGCCCACGAGCAGTTCACAAGCATTGCAGAGAATGTCGAGTGAGGTAGAAAGGATCTCAACTTTACCTTGCATGCCTGCTAGAGATAGAAAATTGCATCGTGGGAAGGCATCAGCTGCAGGGCATTGTGAAGATCCAATTGATGAACCAAGCAATCCTCGTGTCCAGAGGAAAAATATATCAAATGATCATCAACAGAAGGAGCTGATGATACCAAGAACTGAGAAACTTAAGTTACATCTTGGACCTGTTTCAACGAGTTACAATGGCTCAGCTAATGCTTCAAATGGAAATTGTTGTGCCAAATCTCTATCAGCTCTGTATCAGAATGTGCCCAAGAAAGATGCTACCTCAGCATGCAATAATAGTAAAAGAACTCAGAAGGGTAGTATTGACATTGCCTCTTCACCTTTGGGAGAAATTAAAATTTCTTTAAACTGCGAAGCTGCTTTGGGACAACCAAACTTCCGTATTCCTGATTTGGATGCTATCATGAAATCCATTGAGGAGAAATACCTGAAGGCTCACAAGATAGTCGAGCCTCAATCATCTATGGTTAAGCTATTAGATGATTTATGTGGAATTTACTTGAAGCTGGGCTTGAGTTTAAATCGAAACGGGTCAACTCCCAAGTCTGCAAATTCACGCAATGTGGCATGTCTGCCACTGCAAGCTGTTACTGAAGATGACAAGAATTCCTTTCACTTTCTCGATGACATAACAAAAGGTTCCGAGAATGTTAAAATATCACTGTTGGATGAAACTGGAAGTGAGGACGTGCCTCAGTTTAATTACATACCCTATAATGTAATATATCAAGATGCTAACGTCAATATTTCACTTGCTCGTATTGCGGATGAGGGTTGCTGTGCTGATTGTGCTGGCGACTGTCTTTCCTTATCACTTCCATGTGCATGTTCTCAAGAAACAGGTGGAGAGTTTGCTTACACTCCACGAGGCTTGTTGAAAGAAATATTTTTAAAAGATTGCATGTCTATGAAATTGGAACCTCTAGATCATCATTTTGTGTATTGCCAAGAATGCCCAGTGGAGAGGTCCAGGAATGACATCATGGCCGAACCATGCAAGGGGCATCTGGTTAGGAAGTTTATCAAGGAATGCTGGAGGAAATGTGGTTGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGGGGTTTAAGATGTAAATTGCAGGTGTTTTTGACTCGAGAAGGAAAGGGATGGGGCATCAGAACTCTAGAAGATTTGCCCAAGGGATGTTTTGTATGTGAATATGCAGGGGAAATATTAACCAATACAGAATTATATGAAAGGATTATGCAGAAAAGCGGCAATGACAGACATACATATCCTGTAACCCTTGATGCAGATTGGGGCTCGGAAGGGGTGTTAAAGGATGAGGAGGCACTATGCTTAGATGCAACATATAATGGAAATGTTGCAAGGTTTATCAATCATAGATGCTCGGACGCAAATCTGATAGACATTCCAGTTGAAGTAGAGACACCTGATCGTCACTATTATCATCTTGCTCTCTTCACAAACAGAAATGTGAATGCATACGAGGAATTGACATGGGACTATGGTATTGACTTCGATGATCATGAGCACCCCATTAAAGCATTTAATTGTTGTTGTGGAAGTGGCTTCTGTCGTGATAAGAAACAAAAAGGAACTAGATTATTGAAAGGTAAAAAACTCAAGGAGATACATGCCAGAAAGACGGAGTAG | 2142 | 0.4034 | MTITFGTIMAPHPRVIKAYNAMRSLGISDEEVKPVLKNLLQLYDRNWELIEEDNYRTLIDAYFELKEAKQTEGKRKAPISYLNGRKPKQELHLVDGDDQVSSTDNSSQGLSVEDSEITPNAFKQKIIKSSQTSIVHMKPTSSSQALQRMSSEVERISTLPCMPARDRKLHRGKASAAGHCEDPIDEPSNPRVQRKNISNDHQQKELMIPRTEKLKLHLGPVSTSYNGSANASNGNCCAKSLSALYQNVPKKDATSACNNSKRTQKGSIDIASSPLGEIKISLNCEAALGQPNFRIPDLDAIMKSIEEKYLKAHKIVEPQSSMVKLLDDLCGIYLKLGLSLNRNGSTPKSANSRNVACLPLQAVTEDDKNSFHFLDDITKGSENVKISLLDETGSEDVPQFNYIPYNVIYQDANVNISLARIADEGCCADCAGDCLSLSLPCACSQETGGEFAYTPRGLLKEIFLKDCMSMKLEPLDHHFVYCQECPVERSRNDIMAEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLRCKLQVFLTREGKGWGIRTLEDLPKGCFVCEYAGEILTNTELYERIMQKSGNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCSDANLIDIPVEVETPDRHYYHLALFTNRNVNAYEELTWDYGIDFDDHEHPIKAFNCCCGSGFCRDKKQKGTRLLKGKKLKEIHARKTE* | 714 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso20g1857 | 713 | Pfam | Ubiquitin-binding WIYLD domain | 14 | 67 | IPR018848 | GO:0018024 | |
| Gso20g1857 | 713 | SMART | preset_2 | 374 | 516 | IPR007728 | GO:0005634|GO:0008270|GO:0018024|GO:0034968 | |
| Gso20g1857 | 713 | MobiDBLite | consensus disorder prediction | 98 | 115 | - | - | |
| Gso20g1857 | 713 | Pfam | Pre-SET motif | 377 | 524 | IPR007728 | GO:0005634|GO:0008270|GO:0018024|GO:0034968 | |
| Gso20g1857 | 713 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN | 9 | 710 | - | - | |
| Gso20g1857 | 713 | CDD | SET_SETDB-like | 398 | 666 | - | - | |
| Gso20g1857 | 713 | MobiDBLite | consensus disorder prediction | 87 | 115 | - | - | |
| Gso20g1857 | 713 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 1 | 712 | IPR025776 | - | |
| Gso20g1857 | 713 | SUPERFAMILY | SET domain | 384 | 689 | IPR046341 | - | |
| Gso20g1857 | 713 | SMART | set_7 | 532 | 672 | IPR001214 | GO:0005515 | |
| Gso20g1857 | 713 | Pfam | SET domain | 544 | 666 | IPR001214 | GO:0005515 | |
| Gso20g1857 | 713 | ProSiteProfiles | Pre-SET domain profile. | 426 | 529 | IPR007728 | GO:0005634|GO:0008270|GO:0018024|GO:0034968 | |
| Gso20g1857 | 713 | PANTHER | INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED | 9 | 710 | - | - | |
| Gso20g1857 | 713 | ProSiteProfiles | SET domain profile. | 532 | 666 | IPR001214 | GO:0005515 | |
| Gso20g1857 | 713 | Gene3D | SET domain | 355 | 677 | IPR046341 | - | |
| Gso20g1857 | 713 | Gene3D | - | 3 | 68 | IPR043017 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso20g1857 | Gso-Chr20 | 49274937 | 49282911 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso20g1857 | 508 | 681 | C2H2 Transcription Factor Family | AT2G23740 | 43.094 | 2.26e-31 | 129 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | SET | Gso20g1857 | Pre-SET | 2e-17 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso20g1857 | - | - | gsj:114402909 | 1427.15 |