Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1854 ATGGAGGGAAAAACTGAGGATGAAGTGGTGGATATTGAGAGTGCTTCTAGTGGTTCTTCCAATGATGATTCAGATGATGAGGAATCTTTAGTTCCTGAAATAGATGATGGAATGCGTCTTGGGGAGTCATTAACAGAAGAGGAAATACAAGATCTTATTTCTGAGTTGTTAGAAGTGGAGAGTAAGGCTGCAGAGGCTCAAGAGGCTCTTGAAGAGGAGTCTCTTTCTAAAGTGGAGAGTGAAGTTAGACAAGAATTGAAACAAAATCTTCAAGGGGATGATTTGGAAACTGCTGTTGCTGATGAGATGGCTACTTTTAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGCATTGAGCTTCCTAGCCTTTATAAGTTGATTGAAAGAGAAGCTCCTAATGTTTGCTCCACTGAAGCATGGAAAAAGAGGAATCATTGGGTTGGCTCTCTGGCAACTGCTGAAATTTCTGAGTCAATTGCTGATGCTGAGAAACATCTGCAAGTAAACAGACCTGTTAGAAGGCGGCATGGTAAATTATTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAGACTCTGTGATGAATCCCAAGAGCCAGTAAAGAATGAGGGGGATTGGGATCTGTTCAATAAAATAGTTTCTGATGGGAGTGGCACTGATGCTTCATTTGGCAGTAAGCATTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCAAATTTCCTGGAGTTGATGAGGTGGAGGAGATTGATGATGTTGATGGAAATTCTACGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAATTAGATCTTTCTGATGAGCAAAGGAGACAATTTAAAAAGGTCAAAGAAGAGGATGATGCAATTGTAGATAGGAAACTTCAAATCCGTTTGAAACATAGGAGGCAAAAAAGGAAAAGTAAACAGCGAGAAATGAGCACACCTATGCTGTTGACGGAGAACCACATACAGAAACCTTCATTTGTTGATAATTTAAGCCCTGCTGTGAATGAAGGAACTAGCGATGATGGGAAAATTGTGTCTGACAGTGGCAAGGATGCATGTGTGCTTATGGAGGCTGATAAAATTAAAGTTTTTGATGCCAGTCATCATGTTGACAAAGAAAAACTTACGAGTACTGGTGGCTTGTCAGATGATATTGAACAGAGAGGAATCAAACGTGTAAACAGTGGGGAGCTTGATGCTGACAATAAAAAGTGTCGGATTGTTGTTATTGACAGTAATAATGAAGCAGAGGTCATTGAAAATAAATTAGATTGCAATACTCAAGAGGTAAAAGAAGATTTATGTAACAATGGTGGTGCTTCTCTTCCTTCGGAGTGTCTGGATGAAAAATTTTGGTGCACAGTTTGTGATAAAGTGGCCCTTGAAGTGCATCCACACCCTTTCTTGAAAGTGATTACTTGTGGAGATTGCAATTGCTTATTAAAAGAAAAGACACATAAAAAGGATCAGGGACAAGATTGTTCTGAGGGTTACTGTACATGGTGTGGAGGAAGCAGTGAATTAGTTTGTTGTAAATTATGCAAGATTTTATTCTGCACCAAATGTTTAAAGAAGAATATTGGTGTAGAATTGGTTCCTGGAGTTGAGGACACTAGCTGGCATTGTTGTTGTTGCCATCCAAATCTTTTGCAAAAGCTGTCCTTGCAACTAGCGAAAGCTGTGGGGGCTGCTGATTTAATAGTTTCCAGTTCTGGTAGTGATTCAGATAGTTCAGATGATTCAGATAATTCAGATGACTCAGATGATTCAGATGCGAAGGTTAATGTTACAATCAGCTCCAAGCGAAGACACAAAAAGAAGATTCGGAGGATACTCGATGATGCTGAATTAGGAGAAGAGACAAAGAGGAAAATTGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGCGAGGACAGTTTTCTGCTTCGTCATTTGAAATGAGCTCTGACGGCTGTAATGGGAATTTATCAGAAAGTGCAAGTGTTGAAGTTCTTGGTGATGCAGTAGCAGGTTACATTGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATTTCCGCTAAACTGAAGGCTCATCAGATTACTGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTAAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATAGCTTTTTTGTACACTGCAATGAGATGTGTTGATTTGGGGTTAAGAACTGTGCTTATAGTCACACCTGTCAACGTGCTACATAATTGGCGTCAGGAGTTCATCAAATGGAGACCTTCTGAGTTAAAGCCACTCAGGGTCTTCATGCTGGAAGACGTATCAAGAGATAGAAGGGCAGAATTGCTTGCAAAATGGAGATCTAAAGGTGGTGTCTTTTTGATTGGTTATGCTGCTTTCCGAAATTTGTCTTTTGGGAAGCATGTGAAAGATCGGCACATGGCCAGAGAAATTTGCCATGCTTTGCAGGATGGACCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGACGTAACTCAAGCCTTGAAACAAGTAAAATGCCAGAGAAGAATTGCACTTACTGGATCACCTCTTCAAAACAATCTCATGGAATATTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGGAACCGCTTCCAAAATCCAATAGAGAATGGACAGCACACCAATTCAACTCTGATCGATGTGAAAATTATGAACCAGAGGTCTCATATCCTCTATGAACAGTTAAAAGGCTTTGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTACCACCCAAAACTGTCTTCGTGATAACTGTCAAGCTATCTCCCTTACAGAGAAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTCACTACTCAGGTGCATCCTGAAATGTTAAGGAAGAGATGTTTTTTTGCTGGGTACCAGGCATTAGCTCGGATATGGAACCACCCTGGGATCTTGCAGTTGACAAAAGAAGTCAAGGACTATGTAAAACACGAAGATGCTGTTGAGAATTTTCTTGTGGATGATAGTTACAGTGATGAGAATTCTGATTATAATGTACTTGCTGGAGAGAAGATGAGGTATGGAAATGACTTGCTGCAAAGGAAAGATGACAATGGCTTTTTCCTGAAGGGTTGGTGGAATGATCTTCTTCATGGAAAAATTTATAAAGAGATTGATCACAGTGGCAAAATGGTTTTGCTGATGGAGATACTAACCATGAGTTCTGATGTGGGTGATAAGGTGTTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATTGAACTTTATCTCTCAAGGATACCTCGACGTGGCAAACAAGGGAAGTTTTGGAAGAAAGGAAAAGATTGGTATAGGTTGGATGGAAGGACAGAGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACCAGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACGTATGATCTCCAGGCCATCTATCGATCATGGAGGTATGGGCAGAAAAAGCCTGTGTTTGCTTATCGATTGCTGGCTCATGGAACTATGGAGGAGAAGATATATAAGCGCCAGGTAACAAAGGAGGGACTTGCTGCTAGGGTGGTTGATAGACAGCAGGTGCATAGGACCATTTCTAAAGAAGAAATGCTGCATCTGTTTGAGCTTGGTGATGATGACAACCCTGAGACTTTGGCTGATCTAAGTCAAGAAAATGAGCATCAAGACAACCCTATTTTGGTTGGGCATTCACTGAAACACACAGCACCACATTCAAATGGCAGTAGTTATTCTGATAAGTTAATGGAAAGCTTACTTAGCAAGCATCATCCGCGGTGGATTGCCAATTTTCATGAACATGAATCCCTGCTACAAGAAAACGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCAGAAATCGTTGGAATGGGAAGAAGTGCAGAGAGTACCACTTGGTGAGTCTATTATGCCTGAACAGAAGCCAGAAATGCCAAATGCAATGCCCCAAAATGTATCAGAAAGCTGCAGCATCTTGCCAACTAAACTAAGCAGACGTTTCACGACACGGAAATGTACCAACCTTGCACATATGTTGACACTTCGAAGCCAAGGAACAAAATTTGGATGCAGTACTGTCTGTGGGGAATGTGCCCAGGAGATTAGGTGGGAGGACTTGAAGAAGAGATAG 4458 0.4109 MEGKTEDEVVDIESASSGSSNDDSDDEESLVPEIDDGMRLGESLTEEEIQDLISELLEVESKAAEAQEALEEESLSKVESEVRQELKQNLQGDDLETAVADEMATFKEEWEAVLDDLETESAHLLEQLDGAGIELPSLYKLIEREAPNVCSTEAWKKRNHWVGSLATAEISESIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKRLCDESQEPVKNEGDWDLFNKIVSDGSGTDASFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSTDPFIAAAIANERELDLSDEQRRQFKKVKEEDDAIVDRKLQIRLKHRRQKRKSKQREMSTPMLLTENHIQKPSFVDNLSPAVNEGTSDDGKIVSDSGKDACVLMEADKIKVFDASHHVDKEKLTSTGGLSDDIEQRGIKRVNSGELDADNKKCRIVVIDSNNEAEVIENKLDCNTQEVKEDLCNNGGASLPSECLDEKFWCTVCDKVALEVHPHPFLKVITCGDCNCLLKEKTHKKDQGQDCSEGYCTWCGGSSELVCCKLCKILFCTKCLKKNIGVELVPGVEDTSWHCCCCHPNLLQKLSLQLAKAVGAADLIVSSSGSDSDSSDDSDNSDDSDDSDAKVNVTISSKRRHKKKIRRILDDAELGEETKRKIAIEKERQERLKSLRGQFSASSFEMSSDGCNGNLSESASVEVLGDAVAGYIVNVVREKGEEAVRIPPSISAKLKAHQITGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTVLIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVSRDRRAELLAKWRSKGGVFLIGYAAFRNLSFGKHVKDRHMAREICHALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLIDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQVHPEMLRKRCFFAGYQALARIWNHPGILQLTKEVKDYVKHEDAVENFLVDDSYSDENSDYNVLAGEKMRYGNDLLQRKDDNGFFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRGKQGKFWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQKKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFELGDDDNPETLADLSQENEHQDNPILVGHSLKHTAPHSNGSSYSDKLMESLLSKHHPRWIANFHEHESLLQENEEEKLSKEEQDMAWEVYQKSLEWEEVQRVPLGESIMPEQKPEMPNAMPQNVSESCSILPTKLSRRFTTRKCTNLAHMLTLRSQGTKFGCSTVCGECAQEIRWEDLKKR* 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1854 1485 SMART ultradead3 719 940 IPR014001 -
Gso20g1854 1485 MobiDBLite consensus disorder prediction 595 621 - -
Gso20g1854 1485 Pfam SNF2-related domain 745 1046 IPR000330 GO:0005524|GO:0140658
Gso20g1854 1485 CDD SF2_C_SNF 1119 1262 - -
Gso20g1854 1485 MobiDBLite consensus disorder prediction 1 42 - -
Gso20g1854 1485 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 745 928 IPR014001 -
Gso20g1854 1485 Gene3D - 695 977 IPR038718 -
Gso20g1854 1485 Coils Coil 107 127 - -
Gso20g1854 1485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 983 1316 IPR027417 -
Gso20g1854 1485 CDD ADDz_ATRX 479 573 - -
Gso20g1854 1485 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1131 1299 IPR001650 -
Gso20g1854 1485 SMART helicmild6 1154 1251 IPR001650 -
Gso20g1854 1485 Gene3D - 988 1335 IPR027417 -
Gso20g1854 1485 PANTHER RAD54-LIKE 26 1483 IPR044574 GO:0016887
Gso20g1854 1485 ProSiteProfiles ADD domain profile. 467 599 IPR025766 -
Gso20g1854 1485 Coils Coil 49 76 - -
Gso20g1854 1485 PANTHER RAD54-LIKE 26 1483 - -
Gso20g1854 1485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 709 977 IPR027417 -
Gso20g1854 1485 Pfam Helicase conserved C-terminal domain 1127 1251 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1854 Gso-Chr20 49212707 49258261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1854 753 1304 RAD5 or RAD16-like Gene Family AT5G43530 25.512 1.29e-31 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso20g1854 SNF2_N 4.6e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1854 K10779 - gmx:100818409 2858.17