Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1852 ATGAAAAATGCAACAAGATTAAGAGGAACCAACGCAAAGAAAACAACCACCAAAATGCAAAGCCACTTGCTGTTCTTCTATTATTACATTGGCCTCTCACTTATTTTTACTAAAGCTTCAGCAGATGATGAATTGTCAACTCTTCTCTCAATCAAATCCATTCTCATTGACCCGATGAAGCATCTGAAGGATTGGCAAACACCAAGCAATGTGACACAGCCAGGCTCACCTCATTGTAACTGGACTGGAGTTGGTTGCAACTCGAAAGGCTTTGTAGAGAGTCTTGACCTCTCCAACATGAACCTCAGCGGTCGTGTTTCCAACCGCATTCAATCTCTTTCAAGTCTATCTTCTTTCAACATAAGATGTAACAACTTTGCTTCATCACTGCCCAAATCACTGTCCAACCTCACCTCTCTCAAAAGCTTTGATGTGAGCCAGAACTACTTCACTGGCAGCTTCCCCACTGGTCTTGGAAGAGCTACAGGCTTGAGATTAATCAATGCATCGAGCAATGAATTTTCAGGTTTTCTTCCCGAGGATATTGGAAATGCAACATTGCTCGAGAGCCTTGATTTTCGAGGGAGCTACTTTATGAGTCCAATCCCCATGAGTTTCAAGAATTTGCAGAAGCTCAAGTTTCTAGGCCTTTCAGGCAATAACTTCACAGGGAGGATTCCAGGGTATCTTGGGGAACTTATTTCTCTGGAGACATTGATTATAGGATACAATTTGTTTGAAGGTGGGATCCCTGCAGAGTTTGGCAACCTCACCAGTCTTCAGTACCTTGACTTGGCTGTAGGCAGTCTCGGTGGACAAATTCCAGCTGAATTGGGTAAGCTGACAAAACTCACCACAATTTATTTGTACCATAACAACTTCACAGGAAAAATTCCACCTCAACTTGGCGACATTACTTCACTAGCATTTTTGGACCTCTCTGACAATCAGATCTCAGGAAAGATTCCAGAAGAACTTGCTAAACTGGAAAACCTGAAGCTCTTAAATCTAATGGCCAACAAACTATCTGGGCCTGTACCAGAGAAGCTTGGTGAATTGAAAAATTTACAGGTGCTTGAGCTATGGAAAAATTCTTTACATGGTCCTTTGCCACACAACCTTGGGCAGAACTCTCCTTTGCAGTGGTTGGATGTATCCTCTAACTCGTTATCGGGGGAGATCCCTCCAGGTTTGTGTACTACAGGCAATCTCACTAAACTAATCCTCTTTAATAATTCCTTCACTGGTTTCATTCCAAGTGGACTTGCAAACTGTTTGTCTTTAGTACGTGTTCGGATTCAGAACAATCTTATTTCTGGGACTATTCCAATTGGCTTTGGAAGCCTCCTTGGCCTTCAACGGCTGGAGTTGGCAACGAACAACCTCACTGAGAAAATTCCTACTGATATTACCTTATCCACGTCACTCTCTTTCATTGATGTATCTTGGAACCACCTTGAGTCCTCTTTACCCTCAGATATTCTTTCTATTCCATCCCTTCAAACCTTCATTGCCTCTCATAACAATTTTGGAGGAAATATCCCAGATGAGTTCCAGGACTGTCCATCTCTCTCTGTGCTGGATCTTTCAAACACCCATATATCTGGCACAATCCCTGAAAGCATTGCTTCTTGTCAAAAATTAGTAAACCTTAACCTTCGAAATAACTGCTTGACAGGAGAAATCCCGAAATCAATCACAAAGATGCCCACCTTATCTGTTCTTGATCTGTCCAACAATTCACTGACTGGTAGGATGCCTGAAAATTTTGGCAACTCCCCAGCTCTAGAAATGCTGAATCTGTCCTATAACAAACTTGAGGGTCCAGTACCCTCAAATGGGATGTTGGTGACCATAAATCCTAATGATCTTATCGGCAATGAGGGTCTTTGTGGAGGCATTCTCCCTCCATGTTCTCCAAGTTTGGCTGTGACAAGCCATCGAAGGAGCTCACATATCAGACACGTCATTATTGGTTTTGTGACTGGCGTCTCAGTGATTTTAGCTCTTGGTGCAGTATATTTTGGTGGTAGATGTTTATACAAGAGATGGCACTTGTATAACAATTTCTTCCATGATTGGTTCCAGAGCAATGAGGATTGGCCCTGGAGGTTAGTAGCATTCCAGAGGATCAGCATCACTAGTAGTGACATCCTCGCATGTATAAAGGAATCAAATGTCATAGGCATGGGGGGCACCGGTATTGTCTACAAAGCTGAAATCCATAGACCTCACGTAACCTTAGCAGTGAAGAAACTATGGAGGTCACGAACAGATATAGAAGATGGCAATGATGCGTTGAGAGAAGTGGAACTCCTAGGGAGACTTAGGCACAGGAATATTGTAAGGCTGTTGGGGTATGTACACAATGAAAGGAATGTGATGATGGTTTACGAGTACATGCCTAACGGGAATCTTGGAACAGCACTGCATGGTGAACAATCTGCAAGGTTGCTTGTTGATTGGGTCTCAAGGTACAACATAGCTCTTGGTGTTGCACAAGGGCTTAACTACCTCCACCATGATTGCCACCCACTAGTAATTCACAGGGATATCAAGTCTAACAACATACTCCTTGACTCAAATTTAGAGGCAAGAATAGCAGATTTCGGGTTGGCAAGGATGATGATTCAAAAGAATGAGACAGTTTCCATGGTGGCTGGATCATATGGATACATCGCACCCGAATATGGATACACTCTGAAGGTTGACGAGAAGATTGACATATACAGCTATGGAGTGGTACTTTTGGAGCTCCTAACTGGAAAAATGCCTTTAGACCCTTCATTTGAAGAATCAATTGACATAGTCGAATGGATAAGGAAGAAGAAAAGCAACAAAGCCTTGTTAGAAGCATTGGATCCTGCTATAGCTAGTCAGTGCAAGCATGTCCAAGAAGAAATGCTGCTTGTGCTCCGGATTGCACTTCTATGTACTGCAAAGCTTCCCAAGGAAAGACCACCCATGAGAGACATCGTCACAATGCTTGGAGAGGCAAAGCCAAGAAGGAAAAGTATTTGCCATAATGGGGGACAAGACAGCAGGAGCGTGGAAAAGCCAACGATCTTCACCACCTCCCCAATAATCAGTCTTTTGTAG 3099 0.4305 MKNATRLRGTNAKKTTTKMQSHLLFFYYYIGLSLIFTKASADDELSTLLSIKSILIDPMKHLKDWQTPSNVTQPGSPHCNWTGVGCNSKGFVESLDLSNMNLSGRVSNRIQSLSSLSSFNIRCNNFASSLPKSLSNLTSLKSFDVSQNYFTGSFPTGLGRATGLRLINASSNEFSGFLPEDIGNATLLESLDFRGSYFMSPIPMSFKNLQKLKFLGLSGNNFTGRIPGYLGELISLETLIIGYNLFEGGIPAEFGNLTSLQYLDLAVGSLGGQIPAELGKLTKLTTIYLYHNNFTGKIPPQLGDITSLAFLDLSDNQISGKIPEELAKLENLKLLNLMANKLSGPVPEKLGELKNLQVLELWKNSLHGPLPHNLGQNSPLQWLDVSSNSLSGEIPPGLCTTGNLTKLILFNNSFTGFIPSGLANCLSLVRVRIQNNLISGTIPIGFGSLLGLQRLELATNNLTEKIPTDITLSTSLSFIDVSWNHLESSLPSDILSIPSLQTFIASHNNFGGNIPDEFQDCPSLSVLDLSNTHISGTIPESIASCQKLVNLNLRNNCLTGEIPKSITKMPTLSVLDLSNNSLTGRMPENFGNSPALEMLNLSYNKLEGPVPSNGMLVTINPNDLIGNEGLCGGILPPCSPSLAVTSHRRSSHIRHVIIGFVTGVSVILALGAVYFGGRCLYKRWHLYNNFFHDWFQSNEDWPWRLVAFQRISITSSDILACIKESNVIGMGGTGIVYKAEIHRPHVTLAVKKLWRSRTDIEDGNDALREVELLGRLRHRNIVRLLGYVHNERNVMMVYEYMPNGNLGTALHGEQSARLLVDWVSRYNIALGVAQGLNYLHHDCHPLVIHRDIKSNNILLDSNLEARIADFGLARMMIQKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKMPLDPSFEESIDIVEWIRKKKSNKALLEALDPAIASQCKHVQEEMLLVLRIALLCTAKLPKERPPMRDIVTMLGEAKPRRKSICHNGGQDSRSVEKPTIFTTSPIISLL* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1852 1032 Pfam Leucine rich repeat N-terminal domain 41 87 IPR013210 -
Gso20g1852 1032 ProSitePatterns Serine/Threonine protein kinases active-site signature. 847 859 IPR008271 GO:0004672|GO:0006468
Gso20g1852 1032 PANTHER UNNAMED PRODUCT 33 1013 - -
Gso20g1852 1032 Gene3D Ribonuclease Inhibitor 395 639 IPR032675 -
Gso20g1852 1032 Gene3D Ribonuclease Inhibitor 41 200 IPR032675 -
Gso20g1852 1032 ProSiteProfiles Protein kinase domain profile. 722 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1852 1032 SMART serkin_6 722 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1852 1032 Gene3D Phosphorylase Kinase; domain 1 722 804 - -
Gso20g1852 1032 SUPERFAMILY L domain-like 178 510 - -
Gso20g1852 1032 Pfam Leucine rich repeat 547 606 IPR001611 GO:0005515
Gso20g1852 1032 Pfam Leucine rich repeat 283 342 IPR001611 GO:0005515
Gso20g1852 1032 SUPERFAMILY L domain-like 474 631 - -
Gso20g1852 1032 Pfam Protein kinase domain 724 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1852 1032 Gene3D Ribonuclease Inhibitor 201 297 IPR032675 -
Gso20g1852 1032 Gene3D Ribonuclease Inhibitor 298 394 IPR032675 -
Gso20g1852 1032 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXL1 33 1013 - -
Gso20g1852 1032 PRINTS Leucine-rich repeat signature 308 321 - -
Gso20g1852 1032 PRINTS Leucine-rich repeat signature 569 582 - -
Gso20g1852 1032 ProSitePatterns Protein kinases ATP-binding region signature. 728 752 IPR017441 GO:0005524
Gso20g1852 1032 SUPERFAMILY Protein kinase-like (PK-like) 717 996 IPR011009 -
Gso20g1852 1032 Gene3D Transferase(Phosphotransferase) domain 1 805 1018 - -
Gso20g1852 1032 SUPERFAMILY Outer arm dynein light chain 1 93 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1852 Gso-Chr20 49178462 49182262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1852 22 1032 Receptor kinase-like Gene Family AT1G08590 63.892 0.0 1287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso20g1852 Pkinase 3.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1852 - - gmx:100817339 2018.05