Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1843 ATGTCCACCGCAGCGCAGCCCAAGGCCAAGAAAACGGCGTCGTCCAAGAAGCCCCTCTCCCATCCTACCTTCGCCGTGATGATAGCGGAGGCGATAGCGAGTCTGAAGGAGAGAACCGGTTCGAGCCAATACGCGATAACCAAATTCATCGAAGGCAAGCACAAGGAGTTGCCTCCAACCTACAAGAAGCTTGTTCTCGTTCATCTCAAGAAGTCTGTTGCTGCTGGCAAGCTCGTTAAGGTCAAAAACTCTTTCAAGCTCGCACCGACTAAGTCTGCTCCTGTTAAAGCCGCTGCTGCTCCCAAGAAGCCCACCAAAGCTGCGGCTAAGCCCGCCGCCAAGCCCGCTTCCAAGCCCAAAGCTGCTGCACCTAAGAAGAAGGCTGTTGCCAAGCCCAAGGCCAAAGCTGCGGCCACCAAGCCCAAGGCCAAGCCCGCTAAGGCCGCGCCGAAGAAGGTCGCCGATAAGCCTGCGAAGAAGACTCCCGTAAAGGCCGTGAAGAAGCCCAAGAGCGTCGTGAAGAAACCTAAAAGCGTGAAATCTCCAGCGAAAAAGGCCAAGGCTAAGAAGTGA 573 0.5567 MSTAAQPKAKKTASSKKPLSHPTFAVMIAEAIASLKERTGSSQYAITKFIEGKHKELPPTYKKLVLVHLKKSVAAGKLVKVKNSFKLAPTKSAPVKAAAAPKKPTKAAAKPAAKPASKPKAAAPKKKAVAKPKAKAAATKPKAKPAKAAPKKVADKPAKKTPVKAVKKPKSVVKKPKSVKSPAKKAKAKK* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1843 190 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso20g1843 190 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso20g1843 190 PRINTS Histone H5 signature 114 128 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso20g1843 190 PRINTS Histone H5 signature 152 169 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso20g1843 190 PRINTS Histone H5 signature 174 190 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso20g1843 190 SUPERFAMILY "Winged helix" DNA-binding domain 17 101 IPR036390 -
Gso20g1843 190 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 2 190 - -
Gso20g1843 190 Gene3D - 16 93 IPR036388 -
Gso20g1843 190 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso20g1843 190 MobiDBLite consensus disorder prediction 148 162 - -
Gso20g1843 190 PANTHER HISTONE H1 2 190 - -
Gso20g1843 190 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso20g1843 190 CDD H15 20 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso20g1843 190 MobiDBLite consensus disorder prediction 120 140 - -
Gso20g1843 190 MobiDBLite consensus disorder prediction 163 190 - -
Gso20g1843 190 MobiDBLite consensus disorder prediction 90 190 - -
Gso20g1843 190 Pfam linker histone H1 and H5 family 21 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1843 Gso-Chr20 49069555 49070436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1843 22 87 Single Myb Histone (SMH) Gene Family AT1G72740 33.333 7.06e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1843 K11275 - gmx:100810590 151.754