Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1842 ATGCATTCAACCATTGCGTGTCTTTTGTTGGTGTTCTGTTTCCCTGTTTTCTTAAACGCCGTACCCCCCGACAAAGGTGGCGGCGATTCCTTGATGTTGGGGTGTGGATTAGGCGAAGGTGGCGGTAAAGACAGCGACGGAAGGCAATGGACCCCCGACAACAAATACCTCTCAGGGGGCAACTCCGTCACTTCCAAAGCCTCTTTCCAAGACCCTTCGCTTTTTTCCGAGGTTCCGTACATGACATCACGCGTTTTTACCTCCGAAGCAACCTACAAGTTCCCCGTTAAACCCGACAAACGCTATTGGCTTAGGCTCCATTTCTACCCTGCAGTTTACAACACCTTCGACCCCGCCAATTCGTATTTCTCCGTCACATCAAACGCCGTTACGCTTCTTTCCAATTTCAGCGCCTCAATCACATGCCAAGCCCTCTCACAAGCCTACCTCGACCGAGAGTATTCCCTCGCGCCTTTGGATTCGGACACTCTCACCCTTACCTTCAAACCTTCTGAGAAACAGAACGGTGCTTTCGCTTTTGTTAATGGGATTCAGCTTATTGAAATACCCGAGTTGTTCGATTCGGCTCCTTTGGTGGGGTACTCTGACCAAACCATGGATACAAAAAGTTTGCATTTTCAGACAATGTTCAGATTAAACGTTGGTGGACAATTTATATCTCCGAAACAAGATTCTGGTCTAAGCAGAATGTGGTACGATGATACACCTTATTTATACGGTGCTGCCACTGGTGTTACCAACCAAGCTACCAAGGATGTCAAGATTGACTACAAAACCATGCCACAAAATATTGCTCCTCCTAATGTGTACTCCACTTCAAGATCCATGGGGAACAATAAGGACGTCAACATGGGTTTCAATCTCACGTGGATCTTCCAAGTTGATCCGGGCTCCATGTACCTTACAAGGTTGCATTTTTGTGACTATTACTATTCCAAAGTGAATGAAATTGTTTTCAAAATCTTCATCAACAATCAAACGGCGGAGGCTGAAGCTGATGTGATTGGGTGGACAGGAGGTAAAGGCGTGCCAACTTATAAAGATTATGTGATATATGTGAAAGATGAGGCAGGTGATGATCAACTCTGGCTTGCTTTGCACCCTGCACTTGAAACAAAGCCAGAATTTTATGATTCATTGCTCAATGGGGTGGAGGTGTTCAAGCTCAATGACACCGACTTATCTGGTCCCAATCCTCAACCTTCTGAGATGTTGATTCAACACGAGGAGCACGCAAAGACTTTCCAAAACAAACATGGTAGTAATAAGACTTTTGTTATTGGCAGTGCTGCTGGGGGTGCTGCAGGTTTTGCCTTAGTGGCTGCAATACTTGTTGTTGTTCAACACCAAAAGAAAAAGAAAGCTCCAGGATCATACAACACATCAAGCTGGCTACCTATTTACGGGAATTCACACACCGCAGGCACCAAAACCTCTGGGTCAGGGAAGAGTGTTGGTAGTGCCAACATATCAGCCATGGCTCAAGGATTGTGCCGTTATTTCTCCTTACAAGAGATGAAACAAGCGACCAAGAATTTTGATGAGTCAAATGTGATAGGGGTAGGAGGGTTTGGAAAGGTTTACAAGGGTGTTATTGATAATGGGTTCAAAGTGGCAATCAAAAGATCGAATCCGCAATCAGAACAAGGAGTAAACGAGTTCCAGACTGAGATTGAGATGCTGTCCAAGTTGAGACACAAGCATTTGGTGTCCTTGATTGGTTTTTGCGAGGAGGATAATGAGATGTGTCTGGTTTATGACTACATGGCACATGGCACCATGAGGGAGCACCTTTACAAAGGAAACAAGCCATTGGACACACTATCTTGGAAGCAAAGGTTGGAGATCTGCATAGGAGCTGCAAGAGGCCTTCACTACCTTCACACGGGTGCAAAGTACACCATCATTCATAGAGATGTCAAAACAACCAACATTCTCCTTGATGAAAATTGGGTTGCCAAGGTTTCAGATTTTGGACTTTCCAAAACGGGTCCAAACATGAACCAAGGTCATGTTAGTACTGTGGTGAAAGGTAGCTTTGGATACTTGGATCCTGAATATTTCAGGAGGCAACAATTGACCGAGAAATCAGATGTGTACTCATTTGGGGTTGTTTTATTTGAGGCGCTTTGTTCAAGGCCTGCTCTCAATCCTAGCCTTCCAAAGGAACAAGTAAGCCTTGCGGAATGGGCATTGTACAACAAAAGAAGAGGAACACTTGAGGACATCATTGACCCCAACATCAAAGGACAGATCAACCCTGAAAGCTTGAAAAAGTTTGCTGATGCAGCTGAGAAGTGTGTGTCTGATCTTGGATTCGAACGCCCCTCCATGAATGATCTCTTATGGAATCTTGAATTTGCTCTCAATGTGCAACAAAACCCGAATGGTACAACTCACGAACCGTGTCTTGAGGAAAGTGAGTTTGAAGATGTAAACTTGGAAAAAAATGACATGGCAGCTCACTACAAAAACCTTAGCCTTGGAAGTGAGCATGACCTTAGCCACTAG 2532 0.4479 MHSTIACLLLVFCFPVFLNAVPPDKGGGDSLMLGCGLGEGGGKDSDGRQWTPDNKYLSGGNSVTSKASFQDPSLFSEVPYMTSRVFTSEATYKFPVKPDKRYWLRLHFYPAVYNTFDPANSYFSVTSNAVTLLSNFSASITCQALSQAYLDREYSLAPLDSDTLTLTFKPSEKQNGAFAFVNGIQLIEIPELFDSAPLVGYSDQTMDTKSLHFQTMFRLNVGGQFISPKQDSGLSRMWYDDTPYLYGAATGVTNQATKDVKIDYKTMPQNIAPPNVYSTSRSMGNNKDVNMGFNLTWIFQVDPGSMYLTRLHFCDYYYSKVNEIVFKIFINNQTAEAEADVIGWTGGKGVPTYKDYVIYVKDEAGDDQLWLALHPALETKPEFYDSLLNGVEVFKLNDTDLSGPNPQPSEMLIQHEEHAKTFQNKHGSNKTFVIGSAAGGAAGFALVAAILVVVQHQKKKKAPGSYNTSSWLPIYGNSHTAGTKTSGSGKSVGSANISAMAQGLCRYFSLQEMKQATKNFDESNVIGVGGFGKVYKGVIDNGFKVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEDNEMCLVYDYMAHGTMREHLYKGNKPLDTLSWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMNQGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCSRPALNPSLPKEQVSLAEWALYNKRRGTLEDIIDPNIKGQINPESLKKFADAAEKCVSDLGFERPSMNDLLWNLEFALNVQQNPNGTTHEPCLEESEFEDVNLEKNDMAAHYKNLSLGSEHDLSH* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1842 843 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 24 840 - -
Gso20g1842 843 Gene3D - 33 189 - -
Gso20g1842 843 Gene3D - 211 396 - -
Gso20g1842 843 Pfam Protein tyrosine and serine/threonine kinase 524 721 IPR001245 GO:0004672|GO:0006468
Gso20g1842 843 Gene3D Transferase(Phosphotransferase) domain 1 596 811 - -
Gso20g1842 843 ProSitePatterns Protein kinases ATP-binding region signature. 526 548 IPR017441 GO:0005524
Gso20g1842 843 CDD STKc_IRAK 526 793 - -
Gso20g1842 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Gso20g1842 843 SMART serkin_6 520 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1842 843 Pfam Malectin-like domain 34 395 IPR024788 -
Gso20g1842 843 PANTHER OS07G0166700 PROTEIN 24 840 IPR045272 GO:0004714|GO:0006468
Gso20g1842 843 SUPERFAMILY Protein kinase-like (PK-like) 497 795 IPR011009 -
Gso20g1842 843 ProSiteProfiles Protein kinase domain profile. 520 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1842 843 Gene3D Phosphorylase Kinase; domain 1 481 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1842 Gso-Chr20 49061341 49064679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1842 29 828 Receptor kinase-like Gene Family AT3G51550 54.612 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gso20g1842 Malectin_like 1.4e-36 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1842 - - gmx:100815737 1658.27