Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1838 ATGGTGTCGTCGAGCCAGGTGGTGAAAGTAAAGAGAAATACGCTACGACCATGCATGACATGCCCTCTCTGCCACAAGTTCTTCAAAGATGCCACCACCATCTCTCTCTGCCTTCACACCTTTTGCAGGAAGTGCATATATGAGAAACTCTCGGATGAGGAGATGGATTGCTGTCCTGTGTGCCATATTGACTTAGGCTGCCTTCCGGTGGAGAAACTCAGGCCGGACCATAATTTGCATGATATAAGGGCAAAAATATTCCCTTTTAAAAGAAAAAAGATCAAAGCCCAAGAAGTTTTGTCTTCAATATCATTGCCTGCAAAAAGGAAGGAAAGATCACTTTCATCATTGGTAGTCAGTGCTCCCAAAGTTTCAATGCAGCCTGGCTTTACAGGAAAGAGAACAAAAAACAGTACACGAAAGGCTGCTGCTTTACGTGGATGCAGTTTTCTTCTCGACGAATCAATAAAGAAGGAACAAACAAATGGTGATGATAATATGGATTCTCCCATGCCTGAGCATTCTAAGAAGCATAAGCCCCATGAAGATACAGAGAACAGTGTGCAACATACAGAAGGGAAGGTTGATCTTTGGACACCACTGAACTGTCTTGTTGAAGCTGTCAACAGAACAAAGTCCTCCAGGTCAAATTCACAAGCAACTCCTCTTGCCAAATTAGAGTCCCCAACTACTCCTCATGGTGGACAGGATGCATCTGAAACTACAACCAAAACAGACCTACCTGCTTCTGCCCAGAGTGAATTAAACATTCCAAAATCCAAAAATAAGGATACTGGACTTAAACCAATATTTGGAGATGACAAGGATGCAAACAGCTTGCCTTTAGGACCAGTGAAGCGAAGAAGATTGCGTCCTGCTGGTCAGAAAAGGGTTGCAGCATCTGAGATGTCTGCCTCATCCCCAGCCCCACTCGATGCAACAGGGGGCAAGTGCAACAGAAAAAACAGTCCTATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATTTTCCCTTGCCACAGATCTCAGCATGTTACTTACGAATAAAGGATGGTACTGTGCCTGTCTCATTTATTCAAAAGTACCTTATGAAGAAACTTAATCTTGCCAGTGAAGCAGAGGTGGAAATAATGTGCCGAGGTCAGCCAGTGCTCCCATCTTTACAACTGCATAATTTAGTAGATCTATGGTTCCGGACAGCATCAACCTCAAAAAAGATACCAGCATCAGTGGGGTCCTCAGCCAAAGATTTTGTAATGGTTTTATCATATTGTCGAAAGGCCTTGCCTCCTTGA 1302 0.4363 MVSSSQVVKVKRNTLRPCMTCPLCHKFFKDATTISLCLHTFCRKCIYEKLSDEEMDCCPVCHIDLGCLPVEKLRPDHNLHDIRAKIFPFKRKKIKAQEVLSSISLPAKRKERSLSSLVVSAPKVSMQPGFTGKRTKNSTRKAAALRGCSFLLDESIKKEQTNGDDNMDSPMPEHSKKHKPHEDTENSVQHTEGKVDLWTPLNCLVEAVNRTKSSRSNSQATPLAKLESPTTPHGGQDASETTTKTDLPASAQSELNIPKSKNKDTGLKPIFGDDKDANSLPLGPVKRRRLRPAGQKRVAASEMSASSPAPLDATGGKCNRKNSPIWFSLVASEDQKGDFPLPQISACYLRIKDGTVPVSFIQKYLMKKLNLASEAEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYCRKALPP* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1838 433 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 431 IPR044807 GO:0004842
Gso20g1838 433 SUPERFAMILY RING/U-box 15 85 - -
Gso20g1838 433 MobiDBLite consensus disorder prediction 159 194 - -
Gso20g1838 433 MobiDBLite consensus disorder prediction 209 316 - -
Gso20g1838 433 Pfam Zinc finger, C3HC4 type (RING finger) 21 61 - -
Gso20g1838 433 Gene3D - 310 409 - -
Gso20g1838 433 SMART ring_2 21 61 IPR001841 -
Gso20g1838 433 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Gso20g1838 433 MobiDBLite consensus disorder prediction 159 190 - -
Gso20g1838 433 ProSiteProfiles Zinc finger RING-type profile. 21 62 IPR001841 -
Gso20g1838 433 MobiDBLite consensus disorder prediction 209 260 - -
Gso20g1838 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 111 IPR013083 -
Gso20g1838 433 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 5 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1838 Gso-Chr20 49039212 49044587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1838 7 352 C3H Transcription Factor Family AT2G30580 42.740 3.80e-82 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1838 K16277 - gmx:100783999 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1838 20 49039212 49044587 Gso10g1637 10 42978150 42982263 GST