Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1834 ATGATTAACTTCGAAGAAACCGAGTTGCGACTCGGCCTCCCTGGCAACGACTCAGCACTCAAGGGAAGTGCTGCCAAGAGAGGCTTCTCTGAAACTGCTTCTGTTGATTTGAAGCTTAATCTTTCTTCTTGCATTAACGACTCTGCCTCGGATTCACCCTCATCTGTGTCTACAGAGAAGCCCAAAGAGAACAAGACTACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTTCAAAGGAACAGCAATGAAGAAGAGGCAGAGAAGAGCACGAAGAATGCTTTCGTGAAGGTGAGCATGGATGGTGCACCGTATCTACGAAAGGTGGACATAAAGTTGTACAAGAGCTACCAGGAGCTGTCAGATGCGCTGGCTAAGATGTTCAGTTCCTTCACGATTGAAAAGTGTGGGTCCCAAGGGATGAAGGACTTTATGAATGAGACCAATGGCTCTGACTATGTACCCACATATGAAGACAAGGACGGAGACTGGATGCTCGTCGGTGATGTGCCCTGGGAGATGTTCGTTGAATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGA 684 0.4839 MINFEETELRLGLPGNDSALKGSAAKRGFSETASVDLKLNLSSCINDSASDSPSSVSTEKPKENKTTTAEPPPANDPAKPPAKAQVVGWPPVRSFRKNIVQRNSNEEEAEKSTKNAFVKVSMDGAPYLRKVDIKLYKSYQELSDALAKMFSSFTIEKCGSQGMKDFMNETNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1834 227 ProSiteProfiles PB1 domain profile. 115 209 IPR000270 GO:0005515
Gso20g1834 227 SUPERFAMILY CAD & PB1 domains 113 208 - -
Gso20g1834 227 MobiDBLite consensus disorder prediction 44 87 - -
Gso20g1834 227 Gene3D - 109 221 - -
Gso20g1834 227 MobiDBLite consensus disorder prediction 1 27 - -
Gso20g1834 227 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 220 IPR003311 GO:0005634|GO:0006355
Gso20g1834 227 PANTHER AUXIN-INDUCED PROTEIN AUX28 2 220 - -
Gso20g1834 227 MobiDBLite consensus disorder prediction 44 62 - -
Gso20g1834 227 Pfam AUX/IAA family 6 218 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1834 Gso-Chr20 49003011 49005960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1834 103 212 B3 DNA Binding Superfamily AT2G46530 34.545 1.02e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gso20g1834 AUX_IAA 3.8e-80 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1834 K14484 - gmx:100499872 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1834 20 49003011 49005960 Gso10g1633 10 42911693 42913350 GST