Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1833 ATGGCAGGTAATAGTGGTTCAGAGGGGTTGGGCGATGATTTCTTCGAACAGATCTTAGCAGTGCCTGAAGCCGGCACAGTGGGAATGTTGCAATTGGGGTCCACAACTGGTGCTTTCAGAGGAGCTTCTGGGTTAATGCCTCTGGGCTTGAATTTGGAACAAGCTGCCTTCCTAAGACACCAAGTTAACGTTGACGACGACGTTGTTCATGTTAATGTTGATGATGCCACCATCCACCAACATCACCTCACTCTCCATAACAACAACAACTCCTCATCACCCTCTTCCACTGCACCAATCACCGATAGGGATTCTATGCATATGAGGGGTTTATTTTCCGCGTTTGGACAACTGCATACTCCTATCCGCCCCACGCTGCCATTGCCTCCACCACCTCGTCAGCCACAACTCCACCTCCACCATCATAACCAACAGTTTCAGGGCCAGGCAGCTGCAGCTCCAGCGTCAATGGCTGCTATGCCACAACCACCTGGGATCCGCCCTCGTGTGAGAGCAAGAAGAGGGCAAGCTACAGATCCTCACAGTATTGCTGAGCGGTTGCGTCGTGAAAGAATCGCTGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACGGACAGAGCGGCGATGCTTGATGAAATTGTGGACTATGTGAAGTTCCTTAGGCTTCAGGTTAAGGTCCTGAGCATGAGTAGACTGGGTGGAGCTGGTGCTGTTGCTCAGCTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGGGGGATCAGGACATAGAAGGTGGAGCCAATGAGCAAGCCTGGGACAAGTGGTCCAATGATGGCACAGAACAACAGGTGGCTAAGCTTATGGAAGAAGATGTGGGAGCAGCTATGCAATTTCTTCAGTCCAAGGCACTTTGTATCATGCCCATATCTCTAGCCTCAGCCATTTTTCGTATGCCTCAATCAGAAGCATCAACAGGCATCAAGCCTGAATCTAACAGTCACTGA 999 0.5025 MAGNSGSEGLGDDFFEQILAVPEAGTVGMLQLGSTTGAFRGASGLMPLGLNLEQAAFLRHQVNVDDDVVHVNVDDATIHQHHLTLHNNNNSSSPSSTAPITDRDSMHMRGLFSAFGQLHTPIRPTLPLPPPPRQPQLHLHHHNQQFQGQAAAAPASMAAMPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEGDQDIEGGANEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSEASTGIKPESNSH* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1833 332 Gene3D - 171 233 IPR036638 GO:0046983
Gso20g1833 332 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 8 319 - -
Gso20g1833 332 SMART finulus 182 231 IPR011598 GO:0046983
Gso20g1833 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Gso20g1833 332 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 319 - -
Gso20g1833 332 Pfam Helix-loop-helix DNA-binding domain 181 225 IPR011598 GO:0046983
Gso20g1833 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 235 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1833 Gso-Chr20 48984739 48989842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1833 146 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 73.118 2.86e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso20g1833 HLH 3.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1833 - - gmx:100807570 517.309