LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso20g1831	ATGGATAGGGTGTTCTCAGTGGACGATATCTCCGATCACTTCTGGCAGCCGCCTATCCCTGTCTCCGCCGCCCAAACTTCCTCCCAGATGAGCCGCAGCGCCTCCGAGTGGGCCTTCCAACGCTTCCTCCAGGAAGCTTCCGCCTCCGCACCCTCTCCTCCGTCTTCTTCCTCCGCCGCCGACGTCGTATTCGTCGAGATCGAAGATCAACCTAAGCCCGCCCCTCCCCCTCCGTCAAACGGCGCCGTTCTCCCCAATGCCCCTGGTCCCGTCCCCCTTGACTCCGACGAATACCAGGCCTTCCTCAAGAGCAAGCTCAACCTCGCATGCGCCGCCGTCGCCATGACTAGGGGATCTTTGGCTAAATCTCAAGACCCGTCCCCTTTTTCTGAAGGTGGATCACAGCCGACTAATCCTTCTCTAGTTGAATCTCAGACTACTTCTAAAGGATCTATTCCTTCTGAAAATGATCCATCTAAGTTACAAGATAAAGATACCAATGTACCAGTTGGGATTCCTTCCATACCTGCCATGCAAAAGAAACCTGCTGTTGCAATTAGGCCATCTACAAGTGGATCATCAAGAGAACAGTCAGATGATGAGGACATTGAGGGAGAGACATCTATGAATGACAACACAGACCCTGCTGATGTAAAACGAGTAAGGAGGATGCTATCCAATAGGGAGTCAGCCCGACGCTCTAGAAGAAGAAAGCAGGCTCATTTAACTGACCTAGAAACACAGGTTTCTCAATTAAGAGGTGAAAATTCTACCTTGTTAAAGCGCCTTACTGATGTTAGTCAGAAATACAGCGACTCTGCTGTTGACAACAGAGTTTTAAAAGCTGATGTTGAAACATTAAGAACAAAGGTGAAGATGGCCGAAGAGACCGTCAAAAGAATTACTGGATTGAACCCATTGCTTCATGCCATGTCTGATATATCATCACTGGGCCTGCCATCATTTGATGGAAGAAGCCCTTCAGACACTTCAGCTGATGCAGCTGTTCCTGTGCAAGATGATCCACATCATCACTTCTATCAACCCACATCTACTAATCCTATTCCCAGTCATGATCCGATAGTCAACAATGGATTGGGGGGCATTTCTTCAATTGAAAATGTGCAGCAGAATGCTGCAGTAGTGCTAGGTGGGAACAAGATGGGTCAAACAGCATCCCTGCAGCGGGTGGCTAGCTTGGAACATCTACAGGAGCGGATTCGTGGTGGACCTCCATCTAATGGGGAGCAGTGA	1254	0.4936	MDRVFSVDDISDHFWQPPIPVSAAQTSSQMSRSASEWAFQRFLQEASASAPSPPSSSSAADVVFVEIEDQPKPAPPPPSNGAVLPNAPGPVPLDSDEYQAFLKSKLNLACAAVAMTRGSLAKSQDPSPFSEGGSQPTNPSLVESQTTSKGSIPSENDPSKLQDKDTNVPVGIPSIPAMQKKPAVAIRPSTSGSSREQSDDEDIEGETSMNDNTDPADVKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSDSAVDNRVLKADVETLRTKVKMAEETVKRITGLNPLLHAMSDISSLGLPSFDGRSPSDTSADAAVPVQDDPHHHFYQPTSTNPIPSHDPIVNNGLGGISSIENVQQNAAVVLGGNKMGQTASLQRVASLEHLQERIRGGPPSNGEQ*	418

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso20g1831	417	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	217	269	IPR004827	GO:0003700\|GO:0006355
	Gso20g1831	417	PANTHER	BZIP TRANSCRIPTION FACTOR	1	403	-	-
	Gso20g1831	417	MobiDBLite	consensus disorder prediction	70	85	-	-
	Gso20g1831	417	Gene3D	-	218	273	-	-
	Gso20g1831	417	MobiDBLite	consensus disorder prediction	117	242	-	-
	Gso20g1831	417	MobiDBLite	consensus disorder prediction	45	59	-	-
	Gso20g1831	417	SMART	brlzneu	215	279	IPR004827	GO:0003700\|GO:0006355
	Gso20g1831	417	Pfam	Basic leucine-zipper C terminal	286	412	IPR020983	-
	Gso20g1831	417	SUPERFAMILY	Leucine zipper domain	219	269	IPR046347	GO:0003700\|GO:0006355
	Gso20g1831	417	MobiDBLite	consensus disorder prediction	213	228	-	-
	Gso20g1831	417	MobiDBLite	consensus disorder prediction	45	95	-	-
	Gso20g1831	417	CDD	bZIP_plant_GBF1	220	271	IPR045314	GO:0003700\|GO:0006355
	Gso20g1831	417	Coils	Coil	235	262	-	-
	Gso20g1831	417	MobiDBLite	consensus disorder prediction	324	358	-	-
	Gso20g1831	417	MobiDBLite	consensus disorder prediction	120	157	-	-
	Gso20g1831	417	Coils	Coil	277	297	-	-
	Gso20g1831	417	Pfam	bZIP transcription factor	218	270	IPR004827	GO:0003700\|GO:0006355
	Gso20g1831	417	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	222	237	IPR004827	GO:0003700\|GO:0006355
	Gso20g1831	417	PANTHER	BASIC LEUCINE ZIPPER 63	1	403	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso20g1831	Gso-Chr20	48974680	48978064	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso20g1831	1	308	bZIP Transcription Factor Family	AT4G02640	42.857	6.81e-54	182

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Gso20g1831		bZIP_C	1e-45	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso20g1831	K25784		-	gmx:778135	746.503