Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1831 ATGGATAGGGTGTTCTCAGTGGACGATATCTCCGATCACTTCTGGCAGCCGCCTATCCCTGTCTCCGCCGCCCAAACTTCCTCCCAGATGAGCCGCAGCGCCTCCGAGTGGGCCTTCCAACGCTTCCTCCAGGAAGCTTCCGCCTCCGCACCCTCTCCTCCGTCTTCTTCCTCCGCCGCCGACGTCGTATTCGTCGAGATCGAAGATCAACCTAAGCCCGCCCCTCCCCCTCCGTCAAACGGCGCCGTTCTCCCCAATGCCCCTGGTCCCGTCCCCCTTGACTCCGACGAATACCAGGCCTTCCTCAAGAGCAAGCTCAACCTCGCATGCGCCGCCGTCGCCATGACTAGGGGATCTTTGGCTAAATCTCAAGACCCGTCCCCTTTTTCTGAAGGTGGATCACAGCCGACTAATCCTTCTCTAGTTGAATCTCAGACTACTTCTAAAGGATCTATTCCTTCTGAAAATGATCCATCTAAGTTACAAGATAAAGATACCAATGTACCAGTTGGGATTCCTTCCATACCTGCCATGCAAAAGAAACCTGCTGTTGCAATTAGGCCATCTACAAGTGGATCATCAAGAGAACAGTCAGATGATGAGGACATTGAGGGAGAGACATCTATGAATGACAACACAGACCCTGCTGATGTAAAACGAGTAAGGAGGATGCTATCCAATAGGGAGTCAGCCCGACGCTCTAGAAGAAGAAAGCAGGCTCATTTAACTGACCTAGAAACACAGGTTTCTCAATTAAGAGGTGAAAATTCTACCTTGTTAAAGCGCCTTACTGATGTTAGTCAGAAATACAGCGACTCTGCTGTTGACAACAGAGTTTTAAAAGCTGATGTTGAAACATTAAGAACAAAGGTGAAGATGGCCGAAGAGACCGTCAAAAGAATTACTGGATTGAACCCATTGCTTCATGCCATGTCTGATATATCATCACTGGGCCTGCCATCATTTGATGGAAGAAGCCCTTCAGACACTTCAGCTGATGCAGCTGTTCCTGTGCAAGATGATCCACATCATCACTTCTATCAACCCACATCTACTAATCCTATTCCCAGTCATGATCCGATAGTCAACAATGGATTGGGGGGCATTTCTTCAATTGAAAATGTGCAGCAGAATGCTGCAGTAGTGCTAGGTGGGAACAAGATGGGTCAAACAGCATCCCTGCAGCGGGTGGCTAGCTTGGAACATCTACAGGAGCGGATTCGTGGTGGACCTCCATCTAATGGGGAGCAGTGA 1254 0.4936 MDRVFSVDDISDHFWQPPIPVSAAQTSSQMSRSASEWAFQRFLQEASASAPSPPSSSSAADVVFVEIEDQPKPAPPPPSNGAVLPNAPGPVPLDSDEYQAFLKSKLNLACAAVAMTRGSLAKSQDPSPFSEGGSQPTNPSLVESQTTSKGSIPSENDPSKLQDKDTNVPVGIPSIPAMQKKPAVAIRPSTSGSSREQSDDEDIEGETSMNDNTDPADVKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSDSAVDNRVLKADVETLRTKVKMAEETVKRITGLNPLLHAMSDISSLGLPSFDGRSPSDTSADAAVPVQDDPHHHFYQPTSTNPIPSHDPIVNNGLGGISSIENVQQNAAVVLGGNKMGQTASLQRVASLEHLQERIRGGPPSNGEQ* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1831 417 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 217 269 IPR004827 GO:0003700|GO:0006355
Gso20g1831 417 PANTHER BZIP TRANSCRIPTION FACTOR 1 403 - -
Gso20g1831 417 MobiDBLite consensus disorder prediction 70 85 - -
Gso20g1831 417 Gene3D - 218 273 - -
Gso20g1831 417 MobiDBLite consensus disorder prediction 117 242 - -
Gso20g1831 417 MobiDBLite consensus disorder prediction 45 59 - -
Gso20g1831 417 SMART brlzneu 215 279 IPR004827 GO:0003700|GO:0006355
Gso20g1831 417 Pfam Basic leucine-zipper C terminal 286 412 IPR020983 -
Gso20g1831 417 SUPERFAMILY Leucine zipper domain 219 269 IPR046347 GO:0003700|GO:0006355
Gso20g1831 417 MobiDBLite consensus disorder prediction 213 228 - -
Gso20g1831 417 MobiDBLite consensus disorder prediction 45 95 - -
Gso20g1831 417 CDD bZIP_plant_GBF1 220 271 IPR045314 GO:0003700|GO:0006355
Gso20g1831 417 Coils Coil 235 262 - -
Gso20g1831 417 MobiDBLite consensus disorder prediction 324 358 - -
Gso20g1831 417 MobiDBLite consensus disorder prediction 120 157 - -
Gso20g1831 417 Coils Coil 277 297 - -
Gso20g1831 417 Pfam bZIP transcription factor 218 270 IPR004827 GO:0003700|GO:0006355
Gso20g1831 417 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 222 237 IPR004827 GO:0003700|GO:0006355
Gso20g1831 417 PANTHER BASIC LEUCINE ZIPPER 63 1 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1831 Gso-Chr20 48974680 48978064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1831 1 308 bZIP Transcription Factor Family AT4G02640 42.857 6.81e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso20g1831 bZIP_C 1e-45 No_clan