Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1827 ATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCAGCGCTTCTAGTGAGACATAAGCATGAAAAGAAAAAATATGTGTTGAAGAAGATTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAGATCTGCACACCTGGAGATGGAGCTTATCTCTAAATTAAGAAACCCATTCATTGTGGAGTACAAAGATTCATGGGTAGAAAAGGGTTGTTATGTCTGCATCATTATAGGTTATTGTGAGGGAGGAGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTCCTGTTTCCTGAGGAGAAACTTTGTAAGTGGCTCGTTCAACTTCTTATGGCTCTTGACTACTTGCACATGAACCACATTCTTCACCGTGATGTCAAGTGTTCAAATATCTTCCTAACAAAAGATCATGACATACGTCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCGGATGATCTTGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATATGAAATGACAGCGCATAAGCCTGCATTCAAAGCATTTGATATACAGGCATTGATTAACAAGATTAATAAGTCCATAGTGGCTCCACTGCCAACAAAATATTCTAGCTCGTTTCGAGGTCTTGTTAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCCAGAGCTTCAGAGCTGCTTGGGCACCCACATCTTCAACCTTATGTTCTTAAGGTCCATCTCAAAATTAACAGCCCCAGACGAAGCACATTGCCAGTTCACTGGCCAGAATCCAACTACATGAAGAAAACTAGATTTTTGGTGCCAGAAGATGATCCTGTTTCCATCTATAGGGATAAGCGACATTCTTTCACCAATGATCGGACTCTAAATCCTAGTGTATCTGGAGCTGATCAAGATTCTGTATGTTCTACTCTGGAGATAGATTGTACTCCTGACCATTTGAATCAAAGGTTAGCAGAACTACGTATTGGAGATAGCCATCAAGTGAAGTCAATCCAGAAGCCTGTTGTTTCCAGAACTTCTAGCATTGTTAAGACTCCAAAATTCGCTTCCTCAAAGGTCTCAGCCACCAACAAGAAATCAATGAAATCCTCAAAGAATTGTAAGACGCTTCCTCTTTCACAAAATACCACAAAATCTGCTAATACTAATCGCAGAGCATCATTCCCACTGCCAACAAGGGGTGGTAATCGGCAGCCTCCTTGCAGGTCCGTCAGTTTGCTTAGTCACGTGTCTTCACCAGATATCTCAGTCAATTCTCCACGGATTGATAAGATGGCTGAATTCCCATTAACTTCATATGAAGATTCTTTGTTCCCTATCAATAAAACATCATCCTCTGCACGAGGTTCCTCAGGCTTCCCATCTCATAGCAACCATTCAACTGTGATAGACAAATGCACGGTAGAGGTATATGGTAGAGCCTCTAACAAGCCTGGTAGTATGGATGCGTGGCAGGGAATCAAGCAGAGCGTGTTAAAGGAGATTGATGAGGATAAAAGTGGTTCCTCAGATCAAAATGCAACTGCAGGTGCTTCAAGCCACACCTCTTCTGACTTGCGCCGTCGACAATTTGACCCGTCATCATTCCAACAAAGAGCTGAAGCTTTAGAAGGCTTGCTTGAATTTAGTGCAAGATTGCTACAGCAGGCAAGGTATGATGAACTTGGGGTTCTGTTGAAACCATTTGGGCCTGGAAAGGTTTCCCCTAGGGAAACTGCTATTTGGTTGAGTAAGAGCTTCAAAGAGAACACTTTCAACCCAGAAGAATCCATGTAA 1860 0.4253 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFDIQALINKINKSIVAPLPTKYSSSFRGLVKSMLRKNPELRPRASELLGHPHLQPYVLKVHLKINSPRRSTLPVHWPESNYMKKTRFLVPEDDPVSIYRDKRHSFTNDRTLNPSVSGADQDSVCSTLEIDCTPDHLNQRLAELRIGDSHQVKSIQKPVVSRTSSIVKTPKFASSKVSATNKKSMKSSKNCKTLPLSQNTTKSANTNRRASFPLPTRGGNRQPPCRSVSLLSHVSSPDISVNSPRIDKMAEFPLTSYEDSLFPINKTSSSARGSSGFPSHSNHSTVIDKCTVEVYGRASNKPGSMDAWQGIKQSVLKEIDEDKSGSSDQNATAGASSHTSSDLRRRQFDPSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKENTFNPEESM* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1827 619 PANTHER SERINE/THREONINE-KINASE NEK4 1 604 - -
Gso20g1827 619 CDD STKc_Nek 3 258 - -
Gso20g1827 619 MobiDBLite consensus disorder prediction 530 545 - -
Gso20g1827 619 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Gso20g1827 619 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gso20g1827 619 MobiDBLite consensus disorder prediction 381 428 - -
Gso20g1827 619 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Gso20g1827 619 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1827 619 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1827 619 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1827 619 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 604 - -
Gso20g1827 619 MobiDBLite consensus disorder prediction 524 556 - -
Gso20g1827 619 SUPERFAMILY Protein kinase-like (PK-like) 1 304 IPR011009 -
Gso20g1827 619 MobiDBLite consensus disorder prediction 381 417 - -
Gso20g1827 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1827 Gso-Chr20 48928634 48935423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1827 10 259 MAP Kinase Kinase Kinase AT1G53570 32.157 2.40e-36 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gso20g1827 Pkinase 6.3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1827 K08857 - gmx:100804898 1221.84