Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1826 ATGTGTGAGAGAGAAAGACAGAAATCAGAGAGAGAGAGGGGTTGGTGCGTGGTTTGTAAGTTGCTTGCTTGTAGCATTTTGCTGATTTTAATTTACAGTGAGCACAGGAAAGAAGAGGTAAAGAAGAGAGAAGTGGTAACACAAAACACAAACACAAACATGTTCGATGGAGTACCAGACCAGTTCCACCAATTCATAACTCCAAGGACCTCTCTACCTCTTCACTTACCTTTCCCTCTCCATACTTCAGGAGGAACCCCCAATACGACCACCTTCCCCTCCAATTTTGATCCCTATAACCATCCCCATCAATTGCCACTCCAACCCAACAATCTCTTGCACCCATTACACCACAAAGATGAAGACAAGGAAGAAAACACCACCGTCCCGATGAACTTGGAAATCCAAAGGGATCAAAGGCAACAACTTCCCGAGCTGATTGATCCCTGGAATAACGATGAAGTGCTTGCGCTCTTGAGGATCAGATCTAGCATGGAAAGTTGGTTCCCAGAACTCACTTGGGAACATGTCTCAAGGAAGCTAGCAGAGCTTGGATATAAGAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAGAGTAGATATTTCAACAACATTAATTACGGCAAGAATAATAATAATAATAATAATAGTAGCAATTATCGGTTTCTTAGTGAGCTTGAACAGCTTTATCACCAAGGGGGTAGTGGTGATCATCATCTTGAAAATACGACTCAGCCACCACTGCAGAAACAAGACAAGATGGGCCACCATGCATTGGAGTTGGAAGTAGAAGGGGATTCTAGAAACGTTGTTGACGCATTGGTGACAAAACAAAACGAGCAAAGCGACGAGGCACTAGCAGTGGAAAAGATCACAAAGGACCGCAAGAGGAAGAGGCCTGATAGGTTTGAGATGTTCAAGTGTTTTTGTGAGAGCATTGTGCACAAGATAATGGCTCAGCAAGAAGAGATGCACAACAAGCTCCTTGAGGACATGATGAAGAGAGATGACGAGAAGTTCACTAGAGAGGAAGCTTGGAAGAAGCAAGAGATTGAGAAGATGAACAAGGAGCTTGAGATGATGGCACGTGAGCAAGCTATTGCAGGTGATAGACAAGCCAACATTATCCAAATCCTTAACAAATTCTCAGCCACTTCGTCCCCTGCAAGCCACACCCTCAAGAAGGTAAACAATGATTCAAACCTAAACATCCACATTACACAAAACCCTAATCCTTCACAAACAGAAAACCCTACCTTAAGTGTTGCACAAGACACATTACAAGTGATTCCTTCTACTTCTTCTACTTCAACTCCAGCTCTTCCCCAGAACCCTAGTTCTTATTCTCTAAATATCCAGAATAATAATAATAATATTCCAGTAGAGACAAATTCGGTTTTGAATAAAGGGAATGAGAAAGACGATGTTGGGAGAAGGTGGCCAAAGGATGAAGTGTTGACACTGATAAACCTGAGGTGCACCAGTGTGAACAACAACAACAATGAGGAGAAGGAAGGGAACAACAAGGTCCCTCTTTGGGAGAGAATCTCACAAGGGATGTTGGAGTTGGGATACAAGAGGAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGGAAAACCAAGGATGTTAACAAGAAGAGGTCCCTTGACTCGAGGACTTGTCCCTACTTTCACCAATTGAGCAGTCTCTATAATCAAGGAAAACCCGTTCTGCAATCTGAAAGCCACTTGAATAGTCCACCTAATCAGAATCCCGAGCAAGTGACACCAGATCAAACAACACAAGCTCACGAGTCTTCTTCTCAGGTGGGGTCTGGTGGTGGTTTCAGTGTGCAGCAGCAGCAGGTTGATCATGGAGGTGAGAAAACCTTGATGCAAGTACCTTCTTTGGATTTCGATCAGTTTTAA 1932 0.4343 MCERERQKSERERGWCVVCKLLACSILLILIYSEHRKEEVKKREVVTQNTNTNMFDGVPDQFHQFITPRTSLPLHLPFPLHTSGGTPNTTTFPSNFDPYNHPHQLPLQPNNLLHPLHHKDEDKEENTTVPMNLEIQRDQRQQLPELIDPWNNDEVLALLRIRSSMESWFPELTWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNINYGKNNNNNNNSSNYRFLSELEQLYHQGGSGDHHLENTTQPPLQKQDKMGHHALELEVEGDSRNVVDALVTKQNEQSDEALAVEKITKDRKRKRPDRFEMFKCFCESIVHKIMAQQEEMHNKLLEDMMKRDDEKFTREEAWKKQEIEKMNKELEMMAREQAIAGDRQANIIQILNKFSATSSPASHTLKKVNNDSNLNIHITQNPNPSQTENPTLSVAQDTLQVIPSTSSTSTPALPQNPSSYSLNIQNNNNNIPVETNSVLNKGNEKDDVGRRWPKDEVLTLINLRCTSVNNNNNEEKEGNNKVPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSSLYNQGKPVLQSESHLNSPPNQNPEQVTPDQTTQAHESSSQVGSGGGFSVQQQQVDHGGEKTLMQVPSLDFDQF* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1826 643 ProSiteProfiles Myb-like domain profile. 149 201 IPR001005 -
Gso20g1826 643 MobiDBLite consensus disorder prediction 579 643 - -
Gso20g1826 643 ProSiteProfiles Myb-like domain profile. 481 542 IPR001005 -
Gso20g1826 643 PANTHER - 66 632 - -
Gso20g1826 643 MobiDBLite consensus disorder prediction 579 628 - -
Gso20g1826 643 Pfam Myb/SANT-like DNA-binding domain 148 230 IPR044822 -
Gso20g1826 643 Pfam Myb/SANT-like DNA-binding domain 480 570 IPR044822 -
Gso20g1826 643 CDD GT1 480 549 - -
Gso20g1826 643 Gene3D - 150 206 - -
Gso20g1826 643 Gene3D - 482 547 - -
Gso20g1826 643 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 66 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1826 Gso-Chr20 48915006 48917660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1826 54 574 Trihelix Transcription Factor Family AT5G28300 40.792 2.43e-101 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso20g1826 Myb_DNA-bind_4 5.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1826 - - gmx:100804367 1192.95