Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1820 ATGAGGATTATGATTAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTGAAAGCGGCTGTTATGAAATATGGTAAGAACCAGTGGGCTCGAATCTCTTCGCTCCTTGTTCGCAAATCTGCCAAGCAATGCAAAGCTCGCTGGTATGAGTGGCTCGATCCCTCCATAAAAAAGACTGAGTGGACGAGAGAAGAGGATGAGAAGCTACTTCATCTTGCTAAGCTTATGCCCACTCAATGGAGGACAATTGCTCCAATTGTTGGCCGTACCCCTTCCCAGTGTCTTGAGCGGTACGAGAAGCTCCTTGATGCTGCCTGTGTGAAGGATGAGAACTATGAGCCCGGTGATGATCCTCGGAAATTGCGTCCTGGGGAGATTGATCCAAACCCTGAGTCAAAACCTGCACGCCCAGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGGTTGGCCAACACAAAAGGAAAGAAAGCAAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCCAGGAGGCTTGCTTCTTTACAAAAGAAGAGAGAATTGAAGGCTGCTGGAATTGATATTAGGCAGCGGAAGAGAAAAAGGAAAGGAATAGATTACAATGCAGAAATTCCATTTGAAAAAAGGCCTCCTCCAGGGTTTTTTGATGTTACAGATGAAGATAGACCAGTGGAACAGCCCCAGTTCCCTACTACAATTGAAGAACTTGAAGGGAAAAGGAGGGTTGATGTTGAGGCACAATTAAGAAAGCAGGACATTGCAAAAAATAAAATTGCACAAAGGCAAGATGCCCCATCTGCCATATTGCATGCCAACAAGCTGAATGACCCAGAAACAGTAAGAAAGAGGTCAAAATTGATGCTTCCACCCCCTCAGATTTCAGATCAGGAATTGGATGAAATTGCCAAGTTGGGTTATGCTAGTGACCTTGCAGGAAGTCAGGAACTTGCTGAAGGTAGTGGTGCAACACGGGCTCTTCTGGCTGATTATGCACAGACACCTGGCCAAGGAATGACTCCGTTGCGAACCCCTCAAAGAACACCGGCTGGTAAAGGTGATGCTATCATGATGGAAGCTGAAAATCTGGCCAGGCTGAGAGAGTCTCAAACACCATTGTTAGGAGGAGAGAACCCGGAGTTGCATCCTTCAGATTTTAATGGCGTCACTCCTAAGAAAAAAGAGATTCAGACTCCAAATCCAATGCTGACTCCTTCTGCAACTCCTGGAGGTGCAGGTCTCACTCCTAGAATTGGCATGACACCAACAAGAGATGGTTTTTCTTTTAGCATGACACCAAAGGGAACTCCTCTTAGGGATGCACTACATATTAATGAGGACATGAATATGCATGACAGCACTAAACTTGAGCTACAGAGACAGGCTGATATGAGAAGAAGTTTGCGTTCTGGTTTAGGAAGCCTTCCACAGCCCAAAAATGAGTACCAGATAGTGATGCAACCTGTTCCAGAAGACGCCGAAGAGCCTGAGGAGAAGATTGAAGAGGACATGTCTGATAGAATAGCTAGAGAAAAAGCGGAAGAAGAGGCAAGGCAGCAGGCATTGCTTAGAAAGCGATCAAAAGTCCTTCAACGGGAACTTCCTAGGCCTCCTACAGCATCATTGGAGCTTATAAGAAATTCCTTGATGAGAACTGACGTGGACAAGAGTTCCTTTGTTCCACCAACCTCTATTGAGCAAGCTGACGAGATGATTAGACGGGAGCTTCTAAGTTTACTGGAGCATGACAATGCTAAGTATCCACTTGATGAGAAAGTGATTAAGGAGAAGAAGAAAGGAGCCAAGCGTGCTGTAAATGGGTCTGCTGTCCCTGTGATAGAAGATTTTGAGGAAGATGAAATGAAAGAGGCTGATAAGTTGATAAAGGAAGAGGCCCTGTATCTTTGTGCAGCAATGGGTCATGAAGATGAACCCCTCGATGAATTTATTGAAGCACACAGAACCTGTCTCAATGATCTTATGTACTTTCCTACCCGTAATGCATATGGTCTCTCTAGTGTTGCTGGAAACATGGAAAAGCTAACAGCTTTGCAGAATGAGTTTGAGAATGTGAGAAGCAAATTGGATGATGATAAGGAGAAGATGGTACGGCTTGAGAAGAAGGTGATGGTTCTCACACAAGGCTATGAGATGAGAGTAAAGAAAAGCCTCTGGCCGCAAATTGAGGCCACTTTCAAGCAGATGGATGTTGCTGCAACTGAGTTAGAATGCTTTAAAGCTTTGCAAAAGCAGGAGCAATTAGCAGCATCACATAGGATAAACAATCTGTGGGCTGAAGTACAGAAGCAGAAGGAACTTGAGAAAACTTTGCAAAATAGGTATGGGAGTCTAATTGAAGAGCTGGAAAAGATGCAAAATGTCATGGACCAATGCAGATTACAAGCACAACAGCAAGAAGAAATTAAAGCCAACCATGCTCGTGAGTCAACTGAGACCCCTGAGACCAAGGCTGATGGAATTGATGTACAGGGTACAGCAAATTGTGAAGCTGTACCTCACTCGGTAGAGCATGGACGAGCTCTAGCAGTTGAGTCTTCTGCTGATGGAACTGCTGACCAGCAAGTAGATATTGTGCATGACCAGGCTACTTCTAGTGTCAGTCATGACATGGATGTGGATTCTGATAAATTGGCAAATCCTACACCAGCTGCAGAGAATGTCGATGAAAAAGTGGAAGGTACCGGCACCGGCACCGGCAGCTATACTGACGATGGGGAGACCATGCTGGAAATGGGTGCTGCAGTGGAAGTAAGTAGCCCAAATCATGATGTAGTTGTGGATGCTGTAAACTCACATGATAACAACAGCATGGAAGAAACCAATGCTGTTGGGGAGGAGACGTATTAG 2892 0.4512 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRKRKRKGIDYNAEIPFEKRPPPGFFDVTDEDRPVEQPQFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLAGSQELAEGSGATRALLADYAQTPGQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFNGVTPKKKEIQTPNPMLTPSATPGGAGLTPRIGMTPTRDGFSFSMTPKGTPLRDALHINEDMNMHDSTKLELQRQADMRRSLRSGLGSLPQPKNEYQIVMQPVPEDAEEPEEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRTDVDKSSFVPPTSIEQADEMIRRELLSLLEHDNAKYPLDEKVIKEKKKGAKRAVNGSAVPVIEDFEEDEMKEADKLIKEEALYLCAAMGHEDEPLDEFIEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLTALQNEFENVRSKLDDDKEKMVRLEKKVMVLTQGYEMRVKKSLWPQIEATFKQMDVAATELECFKALQKQEQLAASHRINNLWAEVQKQKELEKTLQNRYGSLIEELEKMQNVMDQCRLQAQQQEEIKANHARESTETPETKADGIDVQGTANCEAVPHSVEHGRALAVESSADGTADQQVDIVHDQATSSVSHDMDVDSDKLANPTPAAENVDEKVEGTGTGTGSYTDDGETMLEMGAAVEVSSPNHDVVVDAVNSHDNNSMEETNAVGEETY* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1820 963 CDD SANT_CDC5_II 55 106 - -
Gso20g1820 963 MobiDBLite consensus disorder prediction 113 149 - -
Gso20g1820 963 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Gso20g1820 963 MobiDBLite consensus disorder prediction 399 413 - -
Gso20g1820 963 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Gso20g1820 963 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 798 - -
Gso20g1820 963 MobiDBLite consensus disorder prediction 213 236 - -
Gso20g1820 963 Gene3D - 60 114 - -
Gso20g1820 963 Coils Coil 782 816 - -
Gso20g1820 963 Coils Coil 167 187 - -
Gso20g1820 963 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Gso20g1820 963 SMART sant 6 55 IPR001005 -
Gso20g1820 963 SMART sant 58 105 IPR001005 -
Gso20g1820 963 Pfam pre-mRNA splicing factor component 406 654 IPR021786 -
Gso20g1820 963 Pfam Myb-like DNA-binding domain 10 70 - -
Gso20g1820 963 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Gso20g1820 963 MobiDBLite consensus disorder prediction 878 919 - -
Gso20g1820 963 MobiDBLite consensus disorder prediction 398 421 - -
Gso20g1820 963 Coils Coil 689 716 - -
Gso20g1820 963 Gene3D - 5 59 - -
Gso20g1820 963 CDD SANT 10 53 IPR001005 -
Gso20g1820 963 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1820 Gso-Chr20 48849666 48861715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1820 1 820 MYB-Related Transcription Factor Family AT1G09770 77.549 0.0 1249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso20g1820 Myb_Cef 6.8e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1820 K12860 - gmx:100801352 1843.55