Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1817 ATGACGACACCACCGTCTTCCTCCTCAGCTTCGCACTCGCAATTCGCCTATTCAAACCCTTCCTCCTCCTCCTACTTCCCCGTTCCCTTTCACCTTCAGCAACCCGCAACCACTCACTACGCTGCGCCCTACGTCGCCGCCCCCTCCGTGCAAATCCCCGCTCCTCCCGTCGTCGGCCCCATTGCTCCCGCGCCGGTTCCCGGCGTGTACTCCGCCGTGCCGCAATATCAGGCACAGCAGTTATTTGAGAGGGATGCGCAGATAATAACGCCGGAGGCTCTTGAGAATGTTAAGGCAGCGATTGCGAGCAGCGACGTGGAACACAAAACTGATGCCAAAAAGAAAGCGGTTCCTCGCAAAGCTGCTGGCCAAGCTTGGGAGGATCCTATCCTTGCGGAGTGGCCAGAAGATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGAGTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAGTATGTTGGAAATCGTCCTATAAAACTACGCAAGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAGAATCACATTCAAAAGAAACCGAAAATGCCAAGGAAAGGTGTGCTGCACAAGTGA 744 0.5121 MTTPPSSSSASHSQFAYSNPSSSSYFPVPFHLQQPATTHYAAPYVAAPSVQIPAPPVVGPIAPAPVPGVYSAVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKTDAKKKAVPRKAAGQAWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNRPIKLRKSKWRERTDYEALEKQKNHIQKKPKMPRKGVLHK* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1817 247 Gene3D - 88 231 IPR012677 -
Gso20g1817 247 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 37 247 - -
Gso20g1817 247 SMART rrm1_1 140 213 IPR000504 GO:0003723
Gso20g1817 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Gso20g1817 247 SUPERFAMILY RNA-binding domain, RBD 123 219 IPR035979 GO:0003676
Gso20g1817 247 MobiDBLite consensus disorder prediction 223 247 - -
Gso20g1817 247 MobiDBLite consensus disorder prediction 1 22 - -
Gso20g1817 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Gso20g1817 247 PANTHER RNA-BINDING PROTEIN 42-LIKE 37 247 - -
Gso20g1817 247 CDD RRM_RBM42 133 215 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1817 Gso-Chr20 48812535 48815688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1817 141 227 Eukaryotic Initiation Factors Gene Family AT1G71770 30.693 3.84e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1817 K25079 - gmx:100800281 466.848