Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1813 ATGTGGTCAGCCCTAAAGAGGAATTACGAGGTTAGCGAGGAGATTGGTCGCGGTCGTTTCGGCACCATCTTCCGCTGCTTCCACCCACTCTCCAACCAACCCTACGCCTGCAAACTCATCGACAAATCCCTCCTCCTTGACTCCACCGACCGCCACTGCCTCCAGAACGAACCCAAATTCATGTCCCTCCTCTCTCCTCACCCCAACATCCTCCAAATCTTCCATGTCTTCGAGGACGACCACTATCTCTCCATCGTAATGGACCTCTGCCAGCCCCACACGCTTTTCGACCGCATGCTCCATGCTCCCTTCTCGGAGTCCCAGGCCGCCTCCCTCCTCAAGAACCTTCTCGAAGCCGTCGCCCACTGCCACCGCCTCGGCGTCGCCCACCGCGACATTAAGCCCGACAATATTCTCTTCGATTCGGCGGACAATCTTAAGCTCGCCGACTTCGGTTCGGCGGAGTGGTTCGGCGACGGGAGGAGCATGAGCGGCGTGGTGGGGACGCCGTACTACGTGGCGCCGGAGGTTCTGTTGGGGAGGGAGTACGATGAGAAGGTTGATGTGTGGAGCTGTGGGGTGATTTTGTATATAATGTTGGCGGGGATTCCCCCTTTTTACGGAGACTCTGCTGCTGAGATCTTTGAGGCTGTGGTTAGGGCTAACCTCAGGTTCCCTTCTAGAATCTTCCGGACTGTGTCCCCCGCCGCCAAGGATCTCTTGAGAAAAATGATCTCTAGGGACTCTTCTAGAAGGTTCTCCGCAGAACAAGCCTTGAGACACCCTTGGATCTTGAGTGCGGGTGACACGGCTGAACTGACTTGA 825 0.5648 MWSALKRNYEVSEEIGRGRFGTIFRCFHPLSNQPYACKLIDKSLLLDSTDRHCLQNEPKFMSLLSPHPNILQIFHVFEDDHYLSIVMDLCQPHTLFDRMLHAPFSESQAASLLKNLLEAVAHCHRLGVAHRDIKPDNILFDSADNLKLADFGSAEWFGDGRSMSGVVGTPYYVAPEVLLGREYDEKVDVWSCGVILYIMLAGIPPFYGDSAAEIFEAVVRANLRFPSRIFRTVSPAAKDLLRKMISRDSSRRFSAEQALRHPWILSAGDTAELT* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1813 274 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1813 274 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Gso20g1813 274 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2 3 273 - -
Gso20g1813 274 CDD STKc_CAMK 8 263 - -
Gso20g1813 274 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1813 274 Gene3D Transferase(Phosphotransferase) domain 1 93 273 - -
Gso20g1813 274 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1813 274 SUPERFAMILY Protein kinase-like (PK-like) 5 266 IPR011009 -
Gso20g1813 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Gso20g1813 274 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gso20g1813 274 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1813 Gso-Chr20 48789337 48790649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1813 9 272 EF-hand Containing Proteins AT1G50700 39.552 3.21e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso20g1813 Pkinase 4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1813 - K08794 gmx:547707 560.451