Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1812 ATGGACCAAGCTCTTGTGGACGACATAATCAACCGCCTTCTCGAAGTTCGCGGCCGCCCGGGCAAGCAGGTGCAGCTGTCGGAGTCGGAGATCCGCCAGCTCTGTGCCGCTTCCAGAGAGATTTTCCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCGGACTACCTCCTGAGGCCAACTACTTATTTTTGGGGGATTATGTGGATCGAGGGAAGCAGAGTTTGGAAACAATATGCCTTCTCCTAGCATATAAAATAAAATATCCCGAGAATTTTTTCCTTTTGAGGGGTAACCATGAATGTGCTTCTATTAACCGTATATATGGATTTTATGATGAGTGTAAACGAAGGTTCAATGTAAGGTTATGGAAGACATTTACAGAATGCTTCAATTGCCTTCCTGTGGCAGCACTGATTGATGAAAAGATTTTGTGCATGCATGGGGGTCTTTCTCCTGACTTGCTTAATTTGGATCAGATTAGAAATCTACAACGGCCCACTGATGTGCCTGATACAGGTTTGCTTTGTGATCTCCTCTGGTCAGACCCAAGCAAAGAGGTCCAAGGTTGGGGAATGAATGACAGGGGAGTTTCATATACATTTGGTGCTGATAAGGTCTCAGAGTTTCTTCAAAAACATGATTTGGATCTTATTTGTCGTGCTCATCAGGTGGTGGAAGATGGGTATGAGTTCTTTGCTAACCGGCAGCTAGTAACAATATTTTCAGCACCTAATTATTGTGGAGAGTTTGACAATGCTGGCGCTATGATGAGTGTCGATGAGACACTAATGTGCTCTTTCCAAATATTAAAGCCAGCTGATAAAAAAGTAAAGCTCAACTTCGGAAGTACTACTACTACTAAGCCAGGAAACTCTCCAGCAGGCGTAAAGGCTTGGGTGTAG 969 0.4365 MDQALVDDIINRLLEVRGRPGKQVQLSESEIRQLCAASREIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTECFNCLPVAALIDEKILCMHGGLSPDLLNLDQIRNLQRPTDVPDTGLLCDLLWSDPSKEVQGWGMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKVKLNFGSTTTTKPGNSPAGVKAWV* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1812 322 CDD MPP_PP1_PPKL 6 294 - -
Gso20g1812 322 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 319 - -
Gso20g1812 322 SMART pp2a_7 26 296 IPR006186 GO:0016787
Gso20g1812 322 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Gso20g1812 322 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Gso20g1812 322 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Gso20g1812 322 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 319 - -
Gso20g1812 322 Gene3D - 1 305 IPR029052 -
Gso20g1812 322 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Gso20g1812 322 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Gso20g1812 322 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Gso20g1812 322 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Gso20g1812 322 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Gso20g1812 322 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Gso20g1812 322 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Gso20g1812 322 SUPERFAMILY Metallo-dependent phosphatases 18 300 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1812 Gso-Chr20 48769362 48776242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1812 55 239 Calmodulin-binding Proteins AT5G63870 32.273 9.11e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1812 K06269 - gmx:100799218 660.603