Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1807 ATGGCGAACCGGTGGTGGACCGGGTCGGTGGGTCTGGAGAACTCTGGCGACTCAATGAAAAAACCGGATCTGGGGTTTTCCATGAACGAGAGTGCGGTGACGGGGAACCATACAGGAGAAGAAGAGGAGAAAGAGAACAGCGACGAGCCCAGAGAGGGAGCGATCGACGTCTCCACCACGCGCCGCCCTAGGGGCCGTCCACCGGGCTCCAAAAACAAGCCGAAACCGCCGATATTTGTCACCAGAGACAGCCCTAACGCGCTGCGAAGCCACGTCATGGAGATCGCCGCCGGAGCCGACATCGCCGACTGCGTGGCGCAGTTCGCTCGGAGGCTCCAGCGCGGCGTCTCCATTCTCAGCGGCAGTGGCACCGTCGTCAACGTCACTATCCGCCAGCCCACGGCGCCAGGCGCCGTCATGGCGCTCCACGGCCGGTTTGATATCCTCTCCCTCACAGGCTCCTTTCTCCCCGGACCGTCCCCTCCCGGCGCCACCGGGCTCACCATCTACCTCGCCGGAGGCCAGGGGCATGTCGTCGGCGGCGGGGTGGTGGGCCCGCTCTTGGCGGCGGCTCCCGTTTTGTTAATGGCGGCTACGTTTTCCAATGCTACGTACGAAAGATTGCCTCTAGAGGATGATGATCAGGAACACGGCGGCGGCGGAGGCTCTCCGCCGGGAATTACCGGCGGTCCCGGCGAGGCCTCGTCGTCGATTTCGGTTTATAACAATAATGTTCCTCCTAATTTAGGTCTTTCGAATGGGCAACATCTGAACCATGAAGCTTATTCTTCTTCTCCTTGGGTTCATTCTCCTCATGCCAGACCTCCTTTCTAA 834 0.6079 MANRWWTGSVGLENSGDSMKKPDLGFSMNESAVTGNHTGEEEEKENSDEPREGAIDVSTTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEIAAGADIADCVAQFARRLQRGVSILSGSGTVVNVTIRQPTAPGAVMALHGRFDILSLTGSFLPGPSPPGATGLTIYLAGGQGHVVGGGVVGPLLAAAPVLLMAATFSNATYERLPLEDDDQEHGGGGGSPPGITGGPGEASSSISVYNNNVPPNLGLSNGQHLNHEAYSSSPWVHSPHARPPF* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1807 277 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 202 IPR005175 -
Gso20g1807 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 11 270 IPR014476 GO:0003680
Gso20g1807 277 ProSiteProfiles PPC domain profile profile. 85 225 IPR005175 -
Gso20g1807 277 MobiDBLite consensus disorder prediction 230 265 - -
Gso20g1807 277 CDD DUF296 89 172 IPR005175 -
Gso20g1807 277 MobiDBLite consensus disorder prediction 1 85 - -
Gso20g1807 277 MobiDBLite consensus disorder prediction 211 277 - -
Gso20g1807 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 11 270 - -
Gso20g1807 277 MobiDBLite consensus disorder prediction 36 59 - -
Gso20g1807 277 Gene3D - 88 216 - -
Gso20g1807 277 SUPERFAMILY AF0104/ALDC/Ptd012-like 85 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1807 Gso-Chr20 48749608 48751084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1807 1 277 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 54.545 5.28e-86 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1807 - - gmx:100797639 495.352