Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1806 ATGGAAATCACTCTTCCTCCTCTTCTTCTTCTTTTTCTGTTGTTGTTGTTCTTTCTTTGTTATCTTGTTCTCTGTGCTTCTGCCACCGACGTAGATTTTGACAACTGCAACTGCGATGATGGGGAAGGGATTTGGAGCATACATAGCATACTCGTTGGCCAAAAAGTCAGCGATTTTTTCATTGCCGTTGCTTATTTTTCCATACCCATTGAACTCCTTTACTTTGTTAGCCGTTCAAACGTTCCATTCAAATTGCTCTTCCTTCAATTTATTGCCTTCATAGTGCTCTGTGGCATGACCCATTTACTCAATGCTTATTCTTATCATGGCCCTCCTTCCTTCCAATTGCTGCTCTCCCTAACCGTCGCTAAATTCCTCACTGCTCTTGTTTCCTGTGCAACCGCTTTAACCCTTCCCCCTCTCATCCCTCTTCTCCTCAAAATCAAAGTTAGGGAGCTTTTCCTGAGGCAGAATGTGATGGAGCTTGGCCAAGAGGTTGGGATGATGAAGAAACAGAAGGAGGCAAGCTGGCATGTTAGGATGCTCACTAGGGAAATTAGGAAGTCTCTTGATAAGCACAACATCCTCTACACTACCCTTGTTGAGCTTTCTAAGGCGTTGGATTTGCATAATTGCGCAGTTTGGATGCCGAATGAGGACCGGCGAGAGATGCACTTGACTCACGAGTTGAAAACCAACTCTGCCAAGAATTTTCAGAATTCTATTCCGGTGAACGACCCTGATGTATTGGAGATAAGAAAGACCAAGGGGGTGAAGATTTTGAGGCCCGATTCTGCAATAGGAGCTGCGAGTAGTGGTGGCTCTGCGGAGTTGGGTGCTGTGGCAGCTATTCGCATGCCGTTACTTCATGTATCAAATTTCAAAGGAGGGACACCCAAGTTGGTTGAGACTTGTTATGCTATACTTGTTTTGGTTCTTCCAAGTTCAAGCACTAGGGTTTGGACCTACCATGAGATGGAGATAGTTGAAGTGGTTGCTGATCAGGTGGCTGTTGCCCTGTCTCATGCCTCTGTTCTTGAAGAGTCTCAGCAAATGAGACAGAAGCTGGAAGAGCGGAACCGAGCGTTGCAACAAGCTAAAAAGAATGCAATGATGGCCAGCCAGGCAAGGAAGTCATTTCAGGAGGTGATGAGCCATGGAATGCGGAGGCCTATGCATTCTATTTTGGGGATGCTTTCATTGTTTCAAGAGGATAATTTAAGGTCTGAGCAGAAGATTATTGGTGATACAATGTTGAAGGTTGGCCATGTGCTCTCCAGTTTGATTAATGATGTAATGGAGATTTCAGAAAATGAAAAGGGAGGCTTTCGGTTAGAGATGAAACCTTTCCTTCTGCATTCGATGATGAGGGAAGCTGCTTCCATTGCCAAGTGTTTGTGTGTTTATGAAGGCTTTGGTTTTGAAATTGATGTCCAGAAGTCTTTGCCTGAAACAGTTATGGGTGATGAGGCAAGGACTTTCCAAGTAATTTTACACATGATTGGCTATTTATTGAACATGAATGACAAAGGGACTCTCAATTTTCGAGTTTTTCTTGAAAGTGATGGTGGAGACAGGGATGATAAAAATATTGGAATATGGAGATCAAGCAGTCAAAATGAGTATGTACATATAAAATTTGATTTTCAGATTACTGAGAGTTCTCAGTCAGACAAAGCAATTTCAACAATACATTATAGTAGTAGGAGGCAGTACTACAACAATGAACCTAAGGAGGGCCTGAGCTTCAGCATGTGCAAAAAGTTGGTACAGATGATGCAAGGTAATATATGGATATCACCGAACTCCCTTGGTTTGGTGCAAGGCATGACACTTCTTCTCAAGTTTCAGATAGGACCATCACTTGGAAAATCCATATTTGCACCTAAAGATTATTCAAGCTCACAGTTCAGAGGCCTTAAGGTTTTGTTAGCCGAGGACGATGGTGTAAACAGGACCGTGACCAAGAAGCTACTTGAGAAGCTTGGTTGTCAAGTAATTGCTGTTTCATCGGGGTTTGAGTGCCTGAGTGCTATAAGTGGTGCTGGTAACTCATCCAGAATTATCCTGTTGGATCTTCACATGCCCGAAATGGATGGCTTTGAAGTGGCAAAGAGAATCCGGAAGTTCCACAGCCGTAGTTGGCCCTTGATTATAGCTCTTATAGCAAGTGCGGAAGAACATGTGAGGGAGAAATGCCTACTTGCTGGAATGAATGGATTGATCCAAAAACCTATCGTACTTCATCAGATAGCAAATGAACTTAGAACAGTCCTACAAAGAGCAGGTGAAAAACTGTGA 2301 0.432 MEITLPPLLLLFLLLLFFLCYLVLCASATDVDFDNCNCDDGEGIWSIHSILVGQKVSDFFIAVAYFSIPIELLYFVSRSNVPFKLLFLQFIAFIVLCGMTHLLNAYSYHGPPSFQLLLSLTVAKFLTALVSCATALTLPPLIPLLLKIKVRELFLRQNVMELGQEVGMMKKQKEASWHVRMLTREIRKSLDKHNILYTTLVELSKALDLHNCAVWMPNEDRREMHLTHELKTNSAKNFQNSIPVNDPDVLEIRKTKGVKILRPDSAIGAASSGGSAELGAVAAIRMPLLHVSNFKGGTPKLVETCYAILVLVLPSSSTRVWTYHEMEIVEVVADQVAVALSHASVLEESQQMRQKLEERNRALQQAKKNAMMASQARKSFQEVMSHGMRRPMHSILGMLSLFQEDNLRSEQKIIGDTMLKVGHVLSSLINDVMEISENEKGGFRLEMKPFLLHSMMREAASIAKCLCVYEGFGFEIDVQKSLPETVMGDEARTFQVILHMIGYLLNMNDKGTLNFRVFLESDGGDRDDKNIGIWRSSSQNEYVHIKFDFQITESSQSDKAISTIHYSSRRQYYNNEPKEGLSFSMCKKLVQMMQGNIWISPNSLGLVQGMTLLLKFQIGPSLGKSIFAPKDYSSSQFRGLKVLLAEDDGVNRTVTKKLLEKLGCQVIAVSSGFECLSAISGAGNSSRIILLDLHMPEMDGFEVAKRIRKFHSRSWPLIIALIASAEEHVREKCLLAGMNGLIQKPIVLHQIANELRTVLQRAGEKL* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1806 766 Gene3D - 440 619 IPR036890 -
Gso20g1806 766 PANTHER ETHYLENE RECEPTOR 11 759 - -
Gso20g1806 766 Gene3D - 169 341 IPR029016 -
Gso20g1806 766 CDD HisKA 374 436 IPR003661 GO:0000155|GO:0007165
Gso20g1806 766 Pfam GAF domain 193 340 IPR003018 GO:0005515
Gso20g1806 766 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 445 602 IPR036890 -
Gso20g1806 766 ProSiteProfiles Histidine kinase domain profile. 383 620 IPR005467 -
Gso20g1806 766 Coils Coil 346 376 - -
Gso20g1806 766 Gene3D - 342 439 - -
Gso20g1806 766 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 361 441 IPR036097 GO:0000155|GO:0007165
Gso20g1806 766 Pfam Response regulator receiver domain 642 754 IPR001789 GO:0000160
Gso20g1806 766 SUPERFAMILY CheY-like 636 761 IPR011006 -
Gso20g1806 766 CDD REC_ETR-like 640 755 - -
Gso20g1806 766 CDD HATPase_ETR2_ERS2-EIN4-like 482 614 - -
Gso20g1806 766 PANTHER TWO-COMPONENT HISTIDINE KINASE 11 759 - -
Gso20g1806 766 Gene3D - 640 765 - -
Gso20g1806 766 ProSiteProfiles Response regulatory domain profile. 641 759 IPR001789 GO:0000160
Gso20g1806 766 PIRSF Ethylen_sen_hybr_HK 9 766 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Gso20g1806 766 SMART REC_2 640 755 IPR001789 GO:0000160
Gso20g1806 766 SUPERFAMILY GAF domain-like 195 343 - -
Gso20g1806 766 Pfam His Kinase A (phospho-acceptor) domain 378 440 IPR003661 GO:0000155|GO:0007165
Gso20g1806 766 SMART HisKA_10 376 441 IPR003661 GO:0000155|GO:0007165
Gso20g1806 766 SMART gaf_1 191 350 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1806 Gso-Chr20 48731280 48736320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1806 30 764 Miscellaneous Gene Families AT3G04580 62.032 0.0 913
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso20g1806 GAF 1.8e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1806 K14509 - gmx:100811462 1443.33