Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1797 ATGGTGACAGAGGAGAAAGTACATGCACTGAAAGACAAGTTGCGGGAGTCGGTCAAGATTATCGTGGAGAGTGATGACTACACCGTGGACGCCGCGGACGAGGCCATGGATGCTCTTTCTGCTCTCAAGGATTTGAAATGCACCACTTCTCTCTCTCGCAACTTGGACGATGCAGCTGTTCCTCCACACTTTCGCTGCCCCCTCTCTGGAAATTTGATGACAGATCCTGTTATCTTGGCCTCTGGACAGAATTTTGATCGGGCTTTCATTCAGAGGTGGCTGAACGAGGTCCGCAGAATTTGCCCTAAGACTCAGCAAGTCCTCTCTCACTCCATCCTGACCCCTAATTGCTTTCTCCAAAACATGATTTCACTGTGGTGTAAAGAGCATGGAGTTGAGCTTCCAAAGCCCGTTTGGGACATTCACGGTGAAAAATTAGCCGAAGATCACAGACTCCATATGCGTTCTCTTCTCTACAAGCTATCACTTTCTGTCTCCGAACAAAAAGAAGCTGCAAAAGAGCTTCGGCAGTTAACAAAGCGAATTCCGACGTTTCGAACACTCTTTGGTGACTCAGAAGTGATTCAACTAATGCTGAGACCCTTATCACCCGGCACGGCCTCCGTGGACCCCGAGCTCCACGAGGACTTGATCACAACTCTTCTTAATCTCTCAATTCACGATAACAACAAGAGGGTCTTAGCAGAGGACGAAAAGGTCATTTCACTTCTTATCGAATCGTTGAAATATTCAGGAACAGTTGAAACGAGAAGCAATGCAGCTGCAGCCATTTTCTCAATGTCAGCTATTGATGCAAACAGGCACATAATTGGAAAATCCGGAGTTATCAAATACTTGGTGGATTTATTAGAAGAGGGGCATCCACCAGCAATGAGAGATGCTGCTTCAGCACTGTTCAAGCTATGCTACACGCATGAAAACAAAGGGAGAACCGTGCGAGAAGGTGCAGTGCAGGTTATTCTCGGCAAGATCGTTGACCATGTTTTAGTTGATGAGTTGTTGGCACTGCTAGCACTTCTCTCTTCGCATCACATGGCTGTTGAAGCATTGGTGAACCATGGTGCTGTACCATTCTTGTTGGATATCTTAAGGGAAAAGGAAAACACATCAGAAGAACGCATCAAGGAAAACTGTGTTGTTATTCTGTGCACAATCTGTTTCAATGATAGAGAAAAAAGGAGGGAAATTGGAGAGGATGAAATGGTCAATGGCACACTGTATGAGCTTGCACAACGCGGGAATTCAAGGGCCCAAAGGAAAGCTAGGGCTATTCTTGAAAGTCTCCACGTGCCTCAATCCTCTACTAGCTAG 1332 0.4617 MVTEEKVHALKDKLRESVKIIVESDDYTVDAADEAMDALSALKDLKCTTSLSRNLDDAAVPPHFRCPLSGNLMTDPVILASGQNFDRAFIQRWLNEVRRICPKTQQVLSHSILTPNCFLQNMISLWCKEHGVELPKPVWDIHGEKLAEDHRLHMRSLLYKLSLSVSEQKEAAKELRQLTKRIPTFRTLFGDSEVIQLMLRPLSPGTASVDPELHEDLITTLLNLSIHDNNKRVLAEDEKVISLLIESLKYSGTVETRSNAAAAIFSMSAIDANRHIIGKSGVIKYLVDLLEEGHPPAMRDAASALFKLCYTHENKGRTVREGAVQVILGKIVDHVLVDELLALLALLSSHHMAVEALVNHGAVPFLLDILREKENTSEERIKENCVVILCTICFNDREKRREIGEDEMVNGTLYELAQRGNSRAQRKARAILESLHVPQSSTS* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1797 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 133 IPR013083 -
Gso20g1797 443 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 3 437 - -
Gso20g1797 443 PANTHER U BOX DOMAIN-CONTAINING 3 437 - -
Gso20g1797 443 SUPERFAMILY RING/U-box 55 137 - -
Gso20g1797 443 SMART arm_5 270 310 IPR000225 GO:0005515
Gso20g1797 443 SMART arm_5 350 394 IPR000225 GO:0005515
Gso20g1797 443 SMART arm_5 228 269 IPR000225 GO:0005515
Gso20g1797 443 SMART Ubox_2 63 126 IPR003613 GO:0004842|GO:0016567
Gso20g1797 443 ProSiteProfiles U-box domain profile. 59 133 IPR003613 GO:0004842|GO:0016567
Gso20g1797 443 Gene3D - 161 436 IPR011989 -
Gso20g1797 443 Pfam U-box domain 60 130 IPR003613 GO:0004842|GO:0016567
Gso20g1797 443 SUPERFAMILY ARM repeat 165 435 IPR016024 -
Gso20g1797 443 CDD RING-Ubox_PUB 64 106 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1797 Gso-Chr20 48627736 48629765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1797 122 435 U-box Gene Family AT3G07360 50.938 2.75e-92 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1797 - - gmx:100806132 841.262