Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1785 ATGGAGACCAACAACAACCTCAACCTCATCGTCCCTAATCCTCAAGATTCACTGTGGATGATGAATTTGAGGACTGGGGAAACAATGGATTCTGGATCTTATCCGGAGCGTCCAGGGGAGCCAGATTGCTCATATTACATCAGAACAGGCCTTTGTAGATTTGGTGCAACATGTCGATTTAATCATCCTCCTAACAGGAGGCTGGCTATTGCCACTGCAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGCCAGTACTATCTGAAGACAGGAACGTGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAAAGATCAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTCTCATTACGGGGTTCTCCTGTTTACCCTACCGTCCATTCTCCAACTACGCCAGGTCAGGAGTCATATGCTGGAGGAATTACAAATTGGTCAAGAGGATCATACATTCCTAGTCCTCGCTGGCAAGGTCCTTCAAGTTATGGGCCCTTAATTCTACCTCAGGGAGTGGTTTCAGTGCCAGGGTGGAGTGCATACAGTGGTCAAATGGGATCAATCTCTACTTCAGACAGTCCACAGCAAGCAATGAGAAATGGTCAAACATATGAAACTTCTCATCAAGGTGAGCTAGCAAATGCAGGATCACAAGGGGCATATTCTCAATTCCGTTCTGGCACTGTTCCAGTAGGGTTTTATACACTGCAGAGGGAGAACATATTTCCTGAGAGACCTGGTCAACCTGAATGCCAATTCTACGTGAAGACAGGAGATTGTAAGTTTGGAGCAGTCTGTCAGTTCCACCACCCGCGAGAGAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATAGGCCTTCCTTTACGTCTTGGAGAACCTTTGTGTGTCTTCTATTCTCGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGAAATTTTCTCTTACAATATCACCGCATCGCCTTCAGCTGATGCCCCAAGCAGGCATTTGTTAGGATCTTCATCTGGAACTGCTGCATTGAATTTATCTTCTGAAGGACTTGTTGAGTCAAGCTCAGCAAAGCCCAGGCCGCTTTCATTATCAGAGATAAGACAGATTCCTTCTGGTGATGATAACATTGATGATGATGTCGCTTGA 1293 0.454 METNNNLNLIVPNPQDSLWMMNLRTGETMDSGSYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRRLAIATARMIGEFPERIGQPECQYYLKTGTCKFGATCKFHHPKDQAGIAGRVALNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRGSPVYPTVHSPTTPGQESYAGGITNWSRGSYIPSPRWQGPSSYGPLILPQGVVSVPGWSAYSGQMGSISTSDSPQQAMRNGQTYETSHQGELANAGSQGAYSQFRSGTVPVGFYTLQRENIFPERPGQPECQFYVKTGDCKFGAVCQFHHPRERLIPAPDCVLSPIGLPLRLGEPLCVFYSRYGICKFGPSCKFDHPMEIFSYNITASPSADAPSRHLLGSSSGTAALNLSSEGLVESSSAKPRPLSLSEIRQIPSGDDNIDDDVA* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1785 430 Gene3D - 281 365 - -
Gso20g1785 430 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 12 427 - -
Gso20g1785 430 ProSiteProfiles Zinc finger C3H1-type profile. 82 110 IPR000571 GO:0046872
Gso20g1785 430 ProSiteProfiles Zinc finger C3H1-type profile. 37 65 IPR000571 GO:0046872
Gso20g1785 430 SMART c3hfinal6 128 155 IPR000571 GO:0046872
Gso20g1785 430 SMART c3hfinal6 335 362 IPR000571 GO:0046872
Gso20g1785 430 SMART c3hfinal6 82 109 IPR000571 GO:0046872
Gso20g1785 430 SMART c3hfinal6 289 316 IPR000571 GO:0046872
Gso20g1785 430 SMART c3hfinal6 37 64 IPR000571 GO:0046872
Gso20g1785 430 PANTHER PROTEIN PHOSPHATASE RELATED 12 427 - -
Gso20g1785 430 Gene3D - 36 112 - -
Gso20g1785 430 SUPERFAMILY CCCH zinc finger 131 156 IPR036855 GO:0046872
Gso20g1785 430 ProSiteProfiles Zinc finger C3H1-type profile. 128 156 IPR000571 GO:0046872
Gso20g1785 430 MobiDBLite consensus disorder prediction 399 430 - -
Gso20g1785 430 SUPERFAMILY CCCH zinc finger 42 65 IPR036855 GO:0046872
Gso20g1785 430 Gene3D - 113 163 - -
Gso20g1785 430 ProSiteProfiles Zinc finger C3H1-type profile. 335 363 IPR000571 GO:0046872
Gso20g1785 430 SUPERFAMILY CCCH zinc finger 338 363 IPR036855 GO:0046872
Gso20g1785 430 SUPERFAMILY CCCH zinc finger 293 319 IPR036855 GO:0046872
Gso20g1785 430 SUPERFAMILY CCCH zinc finger 86 111 IPR036855 GO:0046872
Gso20g1785 430 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 39 64 IPR000571 GO:0046872
Gso20g1785 430 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 109 IPR000571 GO:0046872
Gso20g1785 430 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 155 IPR000571 GO:0046872
Gso20g1785 430 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 291 316 IPR000571 GO:0046872
Gso20g1785 430 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 337 362 IPR000571 GO:0046872
Gso20g1785 430 ProSiteProfiles Zinc finger C3H1-type profile. 289 317 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1785 Gso-Chr20 48540122 48545027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1785 18 429 C2H2 Transcription Factor Family AT3G02830 59.905 9.60e-174 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso20g1785 zf-CCCH 6.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1785 - - gmx:100790771 911.368