Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1778 ATGATGGGGACTGAGCTTATGAGAATATGTGTTAAAGAAGATAATGATGATTTTCCATCAGTTCCACCAGGTTTTGAGTCATATACATCTTTCTCATTGAAGAAGGTAGAAAACAATGAAAAACAAGATGATAAAAATATGACCAGTTGTTCGGCCTCTACTAGTGCTTCTGAATCACCATCAACTCAGGCGGAAAATGATGTTCAAGTTGGTGATACTGCAAAGGTTCCTAGATCCCTTCGACGAAGACCATGGATTAATTATGGACAATATGAGAACATTTCAGATGAAGACCCTGACTGTGAGCGGCATGATCAAAATTTCTCCTCAAGACCTTGTCTTCCTCGAGGAGTCATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTGTTGCCAGGTGGCGACCAGAAGATGCTCGTAAGCCAAATATTGAGGATGCTCCTGTTTTCTACCCTACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCCAAGGCTGAGCCATATGGAATTTGTCGCATTGTTCCGCCATCTTCTTGGAAACCCCCTTGTCCTCTCAAGGAAAAAAGTATATGGGAGGGTTCTAAATTTTCTACCCGTGTTCAGAGGATTGACAAACTTCAGAATCGTGATTCAATGAGAAAGATGTCAAAGATTCAAACTAATATGAAGAGGAAAAGGAGAAGATGCACAAGGATGGGGGTGGATAATAGCACTAGAACAGGACCTAATGCAGGATTTTGTGAAGTTGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCCTGGAAACATTTCAGAGATATGCAGAAGATTTTCAGCTCAAATACTTCAGAAAAAATGAGAATGTATCTCATTTGGGTGCTAATACAACAATTTTAAATGGTACCTCAGAGCCTTCCGTAGAGAACATTGAAGGTGAATATTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGATTTTTGGGAGTGGTTTCCCTAGCAAATCTAGTCAAGTAGGTTCTGCTTCACATGAACAGTACATAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGCTACCTGGCTCTCTGCTCTCTTATGAAAGCAGTGATATATCTGGTGTTCTAGTGCCATGGTTGTATGTAGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAAGATCATCATTTATATTCATTGAATTACTTGCATTGGGGAGCTCCAAAAATGTGGTATGGTGTCCCTGGAAAAGATGCCTGCAAATTGGAAGAGGCCATGCGAAAGCATTTACCAGAGCTTTTTGAAGAACAGCCTGACTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCATCTATCCTTAAGTCTAAAGGAGTACCAGTTTATAGGTGTATCCAAAACCCTGGGGACTTTGTTCTGACATTTCCTAGAGCCTACCACTCTGGGTTCAACTGCGGCTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATAGAGCTGTACCAGGAGCAGGGGCGCAAGACTTCTATATCACATGATAAGCTGTTGCTTGGGGCTGCAAGGGAAGCAGTACAAGCCCAATGGGAGCTTGATTTGCTGAAGAAGAATACTTTGGATAATCTACGATGGAAGGATGTCTGTGGAAAGGATGGCCTTTTGGCAAAAGCACTCAAGATGCGTGTCGAGATGGAGCGAGCAAGAAGGGAATTTCTCTGCAGTCCTTCACAGGCATTAAAAATGGAGAGTACTTTTGATGCTACAAATGAAAGGGAGTGCAACATTTGCTTTTTTGATTTACACCTATCTGCTGCTGGTTGTCGCTGTTCCCCAGATAGATATGCTTGCTTGGATCATGCAAAGCAGTTTTGTTCATGCTCTTGGGATTCCAAATTTTTCCTCTTTCGGTATGATATTAGTGAACTAAATATTCTTGTGGAGGCATTGGAAGGAAAATTAAGTGCAATATACAGATGGGCAAAATCAGATCTTGGGCTGGCGTTATCTTCTTTTGTGTCAGCAAGCAAGGAAACAATACATAAGGAATTGAAATCGTATTCATCCAATTTATCTCATTCTTCCAGGGCCACTGTGCATAAAGAGATGGCTTTGCATCCATTAAATAAATATATTGACAATTCTCAATTGATTGATGTCCCTACAGAGAATCAAGCAAATAGCAAAGATCAGAGCTATTTTCAACAGAGGAAATCGGTTGAATCTATTTCATCTTTGAGATCCATGAAGGAATTGCTAACATTTAAAAGCTCACAACCTACATCTGAGGCGGCTAATCATAAGATCTGTGTTAATAAAGAAGAATCGGTTATATGCAGATCAAATATGAGAACCCCTGGTTGGCAATTGTCTCAAGATGATACATCATATGCTTTATCCGTGCCTCTAGCTCAACATGGAGGTGAAAAAAGTTCACTTAACAGACATAATAACAGTATTATACTTCTTAGTGACGATGAAGATGATGAAAAGATGTCCGGTTCAAATAGAAGGAAGGAACTTTCTTCGATGCTTACATGTCCTAGAGATAAGACAAGTCCATGTAATGATATAGAAAATACAAAGTTGACCATTTCTGTGTCAGATTCTGCTGTGATAGGTGAAAAGGATGCTATTACATTGCCCCGTGAAAATATGAGTTCTGATTCAACTCGACTTTTGCATGTGAAACAAGAATGTCATGAACACACTGGAACAGTTCTAGCCTCTACCCCTGTAGATCTTTCTTGTCATATGGGTCTTACAAGTACAGAATCTATTAGAAATATTCCAGCTCCTTCAAAAGTAGAGGCCAGTGATTATTGTTTGGAAAGTTTGGAGGTTTGTCCTCTGAACCCACAACTTTCTGGCATTAAGGTTAAGACTGAAGATAATCATGAAAACCTTGGAGGATGTGCCACTTCTAATGTAGCAGACAATGCAAGAGCTGTTAATGGGAACATTTCTTGTGCTCCAAACAATTACCGTCAGAAAGGTCCTCGGATTGCAAAGGTTGTCCGGCGCATCAACTGCAATGTTGAACCATTAGAATTTGGAGTAGTGCTTTCTGGAAAGTCTTGGTGCAGTAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTAGATACATAAATGTCTTAGATCCATCCAGTATGTGTTACTATATTTCAGAAATAGTTGATGCTGGACGTGGTTGGCCTCTATTTATGGTTTCCTTGGAAAATTGTGCAAGTGAGGTCTTCATTCATATGTCAGCTGCAAGATGCTGGGAACTGATCAGAGAGAAAGTGAATCAAGAAATTGCAAAGCAACATAAGCTGGGAAGAAAGGGTCTTCCTCCTTTACAGCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGCAATAGTGCAGGCTATTGAGGCGCTGGATCGAACTAGATTATGTAATGAATATTGGGACTCACGGCCCTACTCTCGTCCTCAGGGACAGATTTCTCAATCAAGCCAAACCAATGTCAATGGTGGAAATGGTCAAGGGGTTCTCTTGAATAAGCACATGCCCGTTGAAGTTGTTGCAGTGCTAAGGAGCCTATTTAAAAAGTCTAATGCAGAAGAATTGAACTTATTGTACAGCATTCTTAGTAACAATAGGCCAGAGGCTGACAGGAACCTAGTTGCGCAACTTCTCAATGAAGAGATTCACAAATCACAACCGCCCTAG 3777 0.4101 MMGTELMRICVKEDNDDFPSVPPGFESYTSFSLKKVENNEKQDDKNMTSCSASTSASESPSTQAENDVQVGDTAKVPRSLRRRPWINYGQYENISDEDPDCERHDQNFSSRPCLPRGVIRGCPDCSNCQKVVARWRPEDARKPNIEDAPVFYPTEEEFQDTLKYISSIRSKAEPYGICRIVPPSSWKPPCPLKEKSIWEGSKFSTRVQRIDKLQNRDSMRKMSKIQTNMKRKRRRCTRMGVDNSTRTGPNAGFCEVERFGFEPGPEFTLETFQRYAEDFQLKYFRKNENVSHLGANTTILNGTSEPSVENIEGEYWRMVESPTEEIEVLYGADLETGIFGSGFPSKSSQVGSASHEQYIKSGWNLNNFARLPGSLLSYESSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGAPKMWYGVPGKDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCIQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYQEQGRKTSISHDKLLLGAAREAVQAQWELDLLKKNTLDNLRWKDVCGKDGLLAKALKMRVEMERARREFLCSPSQALKMESTFDATNERECNICFFDLHLSAAGCRCSPDRYACLDHAKQFCSCSWDSKFFLFRYDISELNILVEALEGKLSAIYRWAKSDLGLALSSFVSASKETIHKELKSYSSNLSHSSRATVHKEMALHPLNKYIDNSQLIDVPTENQANSKDQSYFQQRKSVESISSLRSMKELLTFKSSQPTSEAANHKICVNKEESVICRSNMRTPGWQLSQDDTSYALSVPLAQHGGEKSSLNRHNNSIILLSDDEDDEKMSGSNRRKELSSMLTCPRDKTSPCNDIENTKLTISVSDSAVIGEKDAITLPRENMSSDSTRLLHVKQECHEHTGTVLASTPVDLSCHMGLTSTESIRNIPAPSKVEASDYCLESLEVCPLNPQLSGIKVKTEDNHENLGGCATSNVADNARAVNGNISCAPNNYRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINVLDPSSMCYYISEIVDAGRGWPLFMVSLENCASEVFIHMSAARCWELIREKVNQEIAKQHKLGRKGLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDRTRLCNEYWDSRPYSRPQGQISQSSQTNVNGGNGQGVLLNKHMPVEVVAVLRSLFKKSNAEELNLLYSILSNNRPEADRNLVAQLLNEEIHKSQPP* 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1778 1258 MobiDBLite consensus disorder prediction 45 69 - -
Gso20g1778 1258 Pfam F/Y rich C-terminus 1087 1170 IPR003889 GO:0005634
Gso20g1778 1258 SMART cupin_9 360 523 IPR003347 -
Gso20g1778 1258 ProSiteProfiles FYR domain FYRN motif profile. 1024 1082 IPR003888 GO:0005634
Gso20g1778 1258 Pfam jmjN domain 149 182 IPR003349 -
Gso20g1778 1258 Pfam JmjC domain, hydroxylase 390 506 IPR003347 -
Gso20g1778 1258 MobiDBLite consensus disorder prediction 1176 1197 - -
Gso20g1778 1258 Coils Coil 570 590 - -
Gso20g1778 1258 Pfam F/Y-rich N-terminus 1037 1079 IPR003888 GO:0005634
Gso20g1778 1258 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1010 1255 - -
Gso20g1778 1258 PANTHER LYSINE-SPECIFIC DEMETHYLASE 94 700 - -
Gso20g1778 1258 SUPERFAMILY Clavaminate synthase-like 358 550 - -
Gso20g1778 1258 MobiDBLite consensus disorder prediction 1176 1198 - -
Gso20g1778 1258 MobiDBLite consensus disorder prediction 224 244 - -
Gso20g1778 1258 MobiDBLite consensus disorder prediction 845 869 - -
Gso20g1778 1258 SMART fyrc_3 1088 1182 IPR003889 GO:0005634
Gso20g1778 1258 Pfam C5HC2 zinc finger 613 663 IPR004198 -
Gso20g1778 1258 MobiDBLite consensus disorder prediction 36 75 - -
Gso20g1778 1258 Gene3D - 1031 1168 - -
Gso20g1778 1258 ProSiteProfiles JmjN domain profile. 148 189 IPR003349 -
Gso20g1778 1258 ProSiteProfiles FYR domain FYRC motif profile. 1084 1174 IPR003889 GO:0005634
Gso20g1778 1258 SMART fyrn_3 1038 1082 IPR003888 GO:0005634
Gso20g1778 1258 Gene3D Cupin 133 507 - -
Gso20g1778 1258 PANTHER JUMONJI 14-RELATED 94 700 - -
Gso20g1778 1258 PANTHER JUMONJI 14-RELATED 1010 1255 - -
Gso20g1778 1258 ProSiteProfiles JmjC domain profile. 360 523 IPR003347 -
Gso20g1778 1258 SMART JmjN_1 147 188 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1778 Gso-Chr20 48453928 48465064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1778 2 1253 JUMONJI Transcription Factor Family AT1G08620 55.538 0.0 1268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso20g1778 JmjC 4.9e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1778 - - gmx:100800271 2531.9