Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1773 ATGGATGAGAGCAGCGTGGATTCGAATGATGGACCCGTAACTTTCGGGTCGGACTCAACGGGATCCGATTCATACGAGTCCGATCCAAGTCGAAATGTGATATACAACAATACCCAACCCCGAATATCCCCTTCATTTCCAGCTTCACCATCTCCCTCTGTGTTCCCTGCTGCTACCGAGAGCGGAGATTCTTCTCCCCCTTCTGTCACCTTCCCCACTCCGAACCAATTACAAAACCCTCACCGTCTGAAGTCCTTGCTCATTTCCGTGCCCTCAGTTACAGCGAGAATGAAAGGGGGGCGATCGCACCGCCCTCGGAGCTCGGACCCGCCGGACGAGTGGGTGGACGGGTCCTGGACGGTGGACTGCATCTGCGGCGTCACCTTCGACGACGGCGAGGAGATGGTGAAATGCGACGAGTGCGGCGTGTGGGTCCACACGCGCTGCTCGCGCTACGTGAAGGGCGACGACACCTTCTCCTGCGACAAGTGCAAGGCCAGGCACAACAAAAACAACACCACCACCAACAACAGCAACAACAACAGCAACAGCACTACCAACCCCATGGAGACCGAGGTCGCGCAGTTCCTCGTCGAACTCCCCACAAAAACCATCTCCATGGACAATAAAAAAGCCCTCCCCTCCAGGCCCAGGCTCTGGACCGACAAGCCCATCGAGGAGCGGGTCCACGTCCAGGGCCCACCGGGCGGCGACCCCTCCATCTTCGCCGGCCAAAGCGCCTCCTCGATTTTCACGCCCCAGCTCTGGAAGGCATGCGGGTATGTCCCCAAGAAGTTCAATTTTAAGTACAACGAGTTCCCTTTCTGGAATAATAACAACGATAAGGAGGGTGTGCCAGCAAAAGATGGTAATAATAACGATAATGGGGTTGGGGTGTCTAAAGAGGCTAATAACACTGCTGCTGCTCCCCCTGTTGCGCCTTCGGTTGAAACGAGATCTGGTCACGCCAAGGACGCGGACACGGGCAAGTTTGGGAGCCAGGATGTGCCGCCACGTGTCCACGGTGACGTCAAGAAGGAGCGGACTCTGCTGAGGCCTCCGGTTGTTCATAACAGTAAACGCAGTAAAGGGGATTTGGGGAATTCGAGTTCCAAGGAGAGGATTGGGAAGAAACGCCTTAGGACTTCTGACAGGGAGGTAGATTCCAGGAAGAGAACGCTGCATTCCTCCAAATCAGCGTTTACGCCCACCGGTGATGGAAAACAATTGGACTTTTATGAGGACAGAGGATCAAAGATGTTCAAGGCTGATGCTCGGAGCATAAAGAATAAAAACTTAAAAGACATGGTGGTTCAAGAGCATGTGTCTGATGATCCTGTTGCTGTGGATACTATCATGGAGGAGTCAAATAACAACTTAACCACTACTGAGGACTCCTCAGAACCGTTATATCCTGACATGACTAAACATGGTGTTTCTGTTGGAGATGTTGTAGCAGAAGAGAAGGCTAGTCGTAAAACTCCTACTTTGGTTGAGATGTCTTCTAAGACTGATGATGCTGTTACATCAGCTTTAAAGCAGAATTATGTTGGAAATGCTTCAGTTAAAGAAAAGGATGGAGATTGCTTGGTAGCTGATAATGCAGATGATGCTTTAGTAGTAAGAAGCGCTGCTAGTCCTCGCACAGAAGGTCATTGTGTTTCTGCACCAGAACTTGTGGATAACCAAGTTTCTCAAGATCTTGGCCGTAACATGCGTCCTAGCTCTGCAAAATGCAAAGTTAAGATGGGGAGAGATGATAATGTTGATAATTTTCGGAAGCCCTCAAATTTTCATTCTTCTCCTATCAGTGATCATAAAAACAATGAAAAACCATCTGATCACACATCTGATATTGTTAAAGTGAATGATGCTCCAGTTCCCAGTTTACCATCATGTGAAAGTAAGGTGGGTGGTGTTGACATTTCATCAGAACTAATCCCTGCTGATCATACCAATAAACCAATTGAATTATCTGGTGATTTTTGTCAAAGAAAACTAGAACCGGTGGGGTCTGAAGGTTCCTTGGAAACACAAAAGGGATTTTCAGAAACAAAAGATGGTTTGGATGCTGCTAAAGATCCATCAAAATCTGAAGCACTTGGATGTTCGCCTAAAGTTGGAAAGTCATCTCCGACTTCATCAACCATGAACTCCAAATCATTGGGTCATGACTGCAGATCTGAAGATACTGAAATCCCTAATTCTTTTACGAAGCATGGAGTGATGGCTGATAGTAACATTCACACAAAGAATGAAAATTGTCCAAGTGTTGCTGCCAGGGATGAAAATTCAAAGAAGTCTGTAAAAGAGCGACCAAAATCCTCTTTGAATTCCAATTCAAAAGGATTGCATTCAAGCAGGAGTGTGCAAAATTCTGTCTCAAAGCAAGTGAACTCAGATGCGAGAGATTCTGTTCATGTTTTGTCTTCTAAACCTTTGATACATCAGACTGCAAGTATTTTAGGCTCTAGTGAGTCTAACCATCAGAAGGTTTTACAAGTGCAGAGTAAGATTTCTTCTTCAGCGCCCCAGAAAGTTGAAAAACTTAACCAAACAAACATCCACACTTCCTCCAAGTTGAACCAAAGTCATGTTCCATCAGTGAATCCTTCTTTAATATCGAATTCTTCAATGCTGAGTGATGAAGAGCTTGCTCTGCTATTGCATCAAGAACTGAATAGTTCTCCTCGTGTACCTCGTGTACCCCGAGCACGCCATGCTGGTAGCTTGCCCCAGTTGACTTCCGCTAGTGCTACAAGCATGCTGATGAAGCGAACATCGGGTGGAGGAAAGGATCATTATTTTGCATCTAGACGAAAACACAAGGATGCATCTAGAGATGGGTCTGGCAGTTCTCGTGAACTTGAATACGAAGCTAAAAGGATAGAGAAGGAGAAGGGTCCATCCTCGTCTGATCAGAGGAAACAGGATATGTCATACGCGGAAGATGCTCCTGCAAGGGAAGAAGGCCTTGCATCTATGGCAGCAGCAAACTCCATCACCAACAATACTGTTTCTTCCACCTCTGGAATTGCAAACAGTGATGCATCCACTCCTCCTGAGGATCAGAATTTGTCATCTATGCGTAACTCACCTAGGAATGTATCTGATGATGATACAGCAACTGCTGGAAGGCCAGTTCATCGCACCTTACCTGGTTTAATCAATGATATAATGAGCAAAGGCAGGCGTATGACATATGAGGAACTCTGTAATGCTGTGCTACCGCACTGGCATAACTTGAGGAAACATAATGGAGAGCGTTATGCTTACTCAAGTCACTCTCAGGCTGTTCTTGATTGTTTGAGGAACCGGCATGAATGGGCAAGGTTGGTTGATCGTGGTCCAAAGACAAATTCTAATAGGAAAAGGCGTAAGCTGGATGCTGAAGAGTCTGATGATAATGGATATGGCAAGGGAAGAACTGCAAAAGATGTTGAAGGGAAGAACTTTGAGTTGCAAAAAGAAGAGTTCCCTAAAGGCAAGCGTAAAGCTCGAAAACGCAGGCGCCTTGCTCTTCAGGGAAGAGCAGTGAAGGATGTCAGAAGGAGACAGAAAGCTGACTCGCTAACGGATGAGGATCTCGGTCCATTCTCCAATTCTAGTGAAGAGAGCATGTTCAGTGAAGATGAAATTCAGGCTGGCAGAATACGTCCAGCAGGAAGTTCATCAGATGAGGCAGGTAGTGCCTAA 3696 0.4681 MDESSVDSNDGPVTFGSDSTGSDSYESDPSRNVIYNNTQPRISPSFPASPSPSVFPAATESGDSSPPSVTFPTPNQLQNPHRLKSLLISVPSVTARMKGGRSHRPRSSDPPDEWVDGSWTVDCICGVTFDDGEEMVKCDECGVWVHTRCSRYVKGDDTFSCDKCKARHNKNNTTTNNSNNNSNSTTNPMETEVAQFLVELPTKTISMDNKKALPSRPRLWTDKPIEERVHVQGPPGGDPSIFAGQSASSIFTPQLWKACGYVPKKFNFKYNEFPFWNNNNDKEGVPAKDGNNNDNGVGVSKEANNTAAAPPVAPSVETRSGHAKDADTGKFGSQDVPPRVHGDVKKERTLLRPPVVHNSKRSKGDLGNSSSKERIGKKRLRTSDREVDSRKRTLHSSKSAFTPTGDGKQLDFYEDRGSKMFKADARSIKNKNLKDMVVQEHVSDDPVAVDTIMEESNNNLTTTEDSSEPLYPDMTKHGVSVGDVVAEEKASRKTPTLVEMSSKTDDAVTSALKQNYVGNASVKEKDGDCLVADNADDALVVRSAASPRTEGHCVSAPELVDNQVSQDLGRNMRPSSAKCKVKMGRDDNVDNFRKPSNFHSSPISDHKNNEKPSDHTSDIVKVNDAPVPSLPSCESKVGGVDISSELIPADHTNKPIELSGDFCQRKLEPVGSEGSLETQKGFSETKDGLDAAKDPSKSEALGCSPKVGKSSPTSSTMNSKSLGHDCRSEDTEIPNSFTKHGVMADSNIHTKNENCPSVAARDENSKKSVKERPKSSLNSNSKGLHSSRSVQNSVSKQVNSDARDSVHVLSSKPLIHQTASILGSSESNHQKVLQVQSKISSSAPQKVEKLNQTNIHTSSKLNQSHVPSVNPSLISNSSMLSDEELALLLHQELNSSPRVPRVPRARHAGSLPQLTSASATSMLMKRTSGGGKDHYFASRRKHKDASRDGSGSSRELEYEAKRIEKEKGPSSSDQRKQDMSYAEDAPAREEGLASMAAANSITNNTVSSTSGIANSDASTPPEDQNLSSMRNSPRNVSDDDTATAGRPVHRTLPGLINDIMSKGRRMTYEELCNAVLPHWHNLRKHNGERYAYSSHSQAVLDCLRNRHEWARLVDRGPKTNSNRKRRKLDAEESDDNGYGKGRTAKDVEGKNFELQKEEFPKGKRKARKRRRLALQGRAVKDVRRRQKADSLTDEDLGPFSNSSEESMFSEDEIQAGRIRPAGSSSDEAGSA* 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1773 1231 MobiDBLite consensus disorder prediction 1195 1209 - -
Gso20g1773 1231 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SET-26-RELATED 97 1228 - -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 281 405 - -
Gso20g1773 1231 ProSitePatterns Zinc finger PHD-type signature. 123 164 IPR019786 -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 604 618 - -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 582 636 - -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 1006 1039 - -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 1175 1192 - -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 1006 1049 - -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 1114 1161 - -
Gso20g1773 1231 PANTHER UNCHARACTERIZED 97 1228 - -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 707 722 - -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 898 988 - -
Gso20g1773 1231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 187 IPR013083 -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 932 985 - -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 1 81 - -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 1114 1231 - -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 740 761 - -
Gso20g1773 1231 SMART PHD_3 122 165 IPR001965 -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 339 354 - -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 52 81 - -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 366 395 - -
Gso20g1773 1231 SUPERFAMILY FYVE/PHD zinc finger 111 170 IPR011011 -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 774 805 - -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 911 925 - -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 670 805 - -
Gso20g1773 1231 MobiDBLite consensus disorder prediction 7 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1773 Gso-Chr20 48396553 48407011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1773 121 164 PHD Transcription Factor Family AT5G22260 44.681 3.33e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1773 - - gmx:100799209 2361.64